PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G272800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 599aa    MW: 66144.1 Da    PI: 5.1457
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G272800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4523.7e-1382285971373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l+++L+ cAe +s+gdl++a++l+a+l++++s +g+p+qR+ ay++e+L arla+s+s++yk+l++se +   sse l++++l++ev+P++k
  Aqcoe4G272800.1.p 228 LKQVLVYCAESISDGDLTMAHTLIAELRKMVSVTGEPIQRVGAYLLEGLVARLASSGSSIYKSLKCSEPT---SSELLSYMHLLYEVCPFFK 316
                        5799*****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f+++ aN aI eav+ e+r+HiiDf+i qG QW++L+qaL +Rp+g+p +RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfefn+ +
  Aqcoe4G272800.1.p 317 FGYMSANGAIAEAVKDESRIHIIDFQIAQGSQWVSLIQALGARPGGAPYVRITGIDDSQSAyaRGGGLNIVGQRLSKLAESCNVPFEFNA-A 407
                        *********************************************************999899999************************.8 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a +  +++l +L++++gE++aVn+ ++lh+++desvs+e++rd++L+lvksl Pkvv++veqe+++n+++Fl+rf+e+l+yy+++f+s++++
  Aqcoe4G272800.1.p 408 AMSGCAVQLGNLAIRRGETIAVNFPFMLHHMPDESVSTENHRDRLLRLVKSLGPKVVTLVEQESNTNTAPFLQRFIETLSYYTSMFESIDVT 499
                        9999**************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        lpre++eri+vE+++l+r+ivn++aceg er+erhe l+kWr r+ +aGF+p+pls+ +++++k ll+++  + yr+ee++g+l+lgWk+++
  Aqcoe4G272800.1.p 500 LPREHKERINVEQHCLARDIVNIIACEGPERVERHELLGKWRVRFAMAGFTPYPLSSVVNSTIKDLLENYC-EYYRLEERNGALYLGWKNKA 590
                        **********************************************************************9.66****************** PP

               GRAS 367 LvsvSaW 373
                        Lvs SaW
  Aqcoe4G272800.1.p 591 LVSSSAW 597
                        ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.838202579IPR005202Transcription factor GRAS
PfamPF035141.3E-135228597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MSFQQMSSQI ESGIGFARKD YQYYPGCTVD GFSQSLDYSS MFPSQHESSG ASHSLNYQET  60
PEVDSYCYQQ TIQTLDHHLS SDDSSQGTNF SVRASCQQYC TLESSSVTGG HSIHNSPSSQ  120
SFSPNGSPVS HQEYQSCTPV LGQECQSYPP VQHQSNTYGS PLSVSCITDN DNDNDLLLKI  180
KELESALLVP DSNNMDGFDS ILQAGPNCGS GEQNKWRQMT ESISRGDLKQ VLVYCAESIS  240
DGDLTMAHTL IAELRKMVSV TGEPIQRVGA YLLEGLVARL ASSGSSIYKS LKCSEPTSSE  300
LLSYMHLLYE VCPFFKFGYM SANGAIAEAV KDESRIHIID FQIAQGSQWV SLIQALGARP  360
GGAPYVRITG IDDSQSAYAR GGGLNIVGQR LSKLAESCNV PFEFNAAAMS GCAVQLGNLA  420
IRRGETIAVN FPFMLHHMPD ESVSTENHRD RLLRLVKSLG PKVVTLVEQE SNTNTAPFLQ  480
RFIETLSYYT SMFESIDVTL PREHKERINV EQHCLARDIV NIIACEGPER VERHELLGKW  540
RVRFAMAGFT PYPLSSVVNS TIKDLLENYC EYYRLEERNG ALYLGWKNKA LVSSSAWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6123559725377Protein SCARECROW
5b3h_D7e-6123559725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272334.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010657429.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_010657430.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_019079174.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2G5D4G50.0A0A2G5D4G5_AQUCA; Uncharacterized protein
STRINGAquca_028_00248.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]