PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G207100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 526aa    MW: 58109.4 Da    PI: 6.2383
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G207100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.31.5e-1171535241374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPi 90 
                        lv+lL++cAeav+ +d + a++lL++l+ +a   g+++qR+a++f+++La rla  ++  +  +  p+ +    +s+++  al+l ++v+P 
  Aqcoe4G207100.1.p 153 LVQLLVSCAEAVACRDRSHASTLLSELRANALVFGTSFQRVASCFVQGLADRLALVQPLGAVGVvaPTMNFMACSSEKKEEALRLVYDVCPH 244
                        689**************************************************98444333233113333444448889999********** PP

               GRAS  91 lkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                        ++f+h++aN  Ilea+ege+ vH++D++++    +G QW  L+++La+R+++pp +lRiTgvg+    s ++l+++g+ L+ +A++lg++fe
  Aqcoe4G207100.1.p 245 IQFGHFVANTSILEAFEGESLVHVVDLGMTmglpHGHQWRRLIHSLANRAGQPPrRLRITGVGN----SGDQLQTIGDELEAYAQSLGINFE 332
                        ***************************9882333567*************877779********....9*********************** PP

               GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                        f + v+++le+l++e++++ +gE+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fd
  Aqcoe4G207100.1.p 333 FLA-VESNLENLKPENFELLEGEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFD 420
                        ***.79*******************************88877777...8******************************************* PP

               GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                        sl+a lp+ + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF+pvp++  + +qak  l kvk  dgy++ ee+g+lvl
  Aqcoe4G207100.1.p 421 SLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQPVPIK--MLAQAKQWLGKVKvCDGYTIVEEKGCLVL 510
                        ***********************************************************97..678************************** PP

               GRAS 361 gWkdrpLvsvSaWr 374
                        gWk++pLv++S+W+
  Aqcoe4G207100.1.p 511 GWKSKPLVAASCWK 524
                        *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.752127505IPR005202Transcription factor GRAS
PfamPF035145.0E-115153524IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MAPGMCMISD TFHDEKIEGV RGLDLSLSAM AFYPFPYLST LENSVSTWFL PSTDDTRNHK  60
RLKPTLSSDE LIGSNNSPYS GGSNNSLFSG GSCITRANST NSLNSLPKLQ FRDHIWTYTQ  120
RFLAAEAVEE AAAAMIGEDG ERVDEGSGDG MRLVQLLVSC AEAVACRDRS HASTLLSELR  180
ANALVFGTSF QRVASCFVQG LADRLALVQP LGAVGVVAPT MNFMACSSEK KEEALRLVYD  240
VCPHIQFGHF VANTSILEAF EGESLVHVVD LGMTMGLPHG HQWRRLIHSL ANRAGQPPRR  300
LRITGVGNSG DQLQTIGDEL EAYAQSLGIN FEFLAVESNL ENLKPENFEL LEGEVLVVNS  360
ILQLHCVVKE SRGALNSVLQ IIHELSPKVL VLVEQDSSHN GPFFLGRFME ALHYYSAIFD  420
SLDAMLPKYD TKRAKIEQFY FAEEIKNIVS CEGPARVERH ERVDQWRRRM SRAGFQPVPI  480
KMLAQAKQWL GKVKVCDGYT IVEEKGCLVL GWKSKPLVAA SCWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6716052326378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322227.10.0DELLA protein RGL1
TrEMBLA0A2G5C1K80.0A0A2G5C1K8_AQUCA; Uncharacterized protein
STRINGAquca_123_00013.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.17e-83RGA-like protein 3