 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aqcoe4G041900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 206aa MW: 24247 Da PI: 8.5874 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aqcoe4G041900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 32.5 | 1.1e-10 | 26 | 62 | 6 | 42 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
+ r+ ++ +R+n + KK ELS LC+++++ ii+s+
Aqcoe4G041900.1.p 26 HVARKNSYRRRKNNLVKKVDELSKLCAVKACAIIYSP 62
567899******************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 206 aa
Download sequence Send
to blast |
MVSRSRSSSL PLNLKKKVKL AWMRDHVARK NSYRRRKNNL VKKVDELSKL CAVKACAIIY 60
SPYDPIPSVW PSNDEAHRLF LQFLTLPDNM QTKKLFNLEF FLKEEIVKLE GKLERAEKSE 120
HEEKMIDLIM RSANGDVLRG LKHEDVQDME CYIEQRMKEI YERGNEQPNL GYYYRMVNDP 180
IEANQFQPVL VDMTMDHSHV QEPRC*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 14 | 36 | KKKVKLAWMRDHVARKNSYRRRK |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX680239 | 0.0 | JX680239.1 Aquilegia coerulea MADS-box protein AGL82 mRNA, complete cds. |
