PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G027300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 450aa    MW: 51032.8 Da    PI: 5.2667
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G027300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.57e-36141042101
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+ye+++de++++++sws ++nsf+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++l
  Aqcoe4G027300.1.p  14 FLTKTYEMVDDEATNSVVSWSPTNNSFIVWKTPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEDFVRGQRHL 96 
                        9********************999*****************************************999.........*************** PP

                        XXXXXXXX CS
       HSF_DNA-bind  94 lekikrkk 101
                        l++i+r+k
  Aqcoe4G027300.1.p  97 LKNIHRRK 104
                        ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.72E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.4E-6410103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.3E-3910103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.4E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEGSQGGSNS PAPFLTKTYE MVDDEATNSV VSWSPTNNSF IVWKTPEFAR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEDFV RGQRHLLKNI HRRKPIHSHS LQNHGQGGLT  120
ESLRQELEDE IEKLKNDKAL LLLDLQRHTQ ERNGMELQVQ TLERRLHQME RHQKQMMAFL  180
AQIMQRPGFL PNLMQQSENH NKKRRLPNGD FFYEEDDIEQ NRVVPYKPAS VERPDDLPLV  240
MINTEPFEKF ELSLNCWENF LRGVGEASGE EMHGVGGKAL QTSGPIISEM HTSSGDTDMS  300
LRPQSPKLLS SSPHSKDVHS SPEVGESMCN VESPVISSLQ LSPEVRPKDL GIDVNSRPAA  360
APETESSKEQ EEGTTPSAVP PGANDDFWGQ FLTETPGASE TQEVQSERRD TAYKKNESKP  420
ANRGSFWWNM KNVDNLTEQM GQLSPAEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-27310319129Heat shock factor protein 1
5d5v_B1e-27310319129Heat shock factor protein 1
5d5v_D1e-27310319129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242159.10.0PREDICTED: heat stress transcription factor A-4b-like
TrEMBLA0A2G5CRS50.0A0A2G5CRS5_AQUCA; Uncharacterized protein
STRINGAquca_039_00029.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-93HSF family protein