PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MIKC_MADS

Protein Properties

Length: 226aa MW: 25772.3 Da PI: 9.7403

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe4G024000.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.7	4.7e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fss+g+lyeys+ Aqcoe4G024000.5.p 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP
2	K-box	104.7	1.1e-34	78	172	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ s++ea+a+ +qqe++kL ++i +Lq+ +R+l+Ge+L++L+++eL+q+e+++e +++kiR+kKnell+++ie++qk+e +lq +nk+Lr+ Aqcoe4G024000.5.p 78 NSGSVSEANAQFYQQEATKLCNQIASLQNHNRKLVGESLSNLNIRELKQIEKKIEGGISKIRAKKNELLFAEIEYMQKRELDLQTDNKYLRA 169 33449**************************************************************************************9 PP K-box 97 kle 99 +++ Aqcoe4G024000.5.p 170 MIA 172 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.613	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-41	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.49E-33	2	75	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.38E-44	2	76	No hit	No description
PRINTS	PR00404	2.6E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.6E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.6E-32	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.2E-25	85	171	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.076	87	177	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048366	Biological Process	leaf development
GO:0048440	Biological Process	carpel development
GO:0048443	Biological Process	stamen development
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCE AEVALIVFSS RGRLYEYSNN 60 SVKKTIERYK KACTDSTNSG SVSEANAQFY QQEATKLCNQ IASLQNHNRK LVGESLSNLN 120 IRELKQIEKK IEGGISKIRA KKNELLFAEI EYMQKRELDL QTDNKYLRAM IAANERAPEH 180 MNLMPANEYH ALSSAPFDSR NFMPANLLDH NNNYSRSDQT TLQLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
5f28_A	1e-20	1	69	1	69	MEF2C
5f28_B	1e-20	1	69	1	69	MEF2C
5f28_C	1e-20	1	69	1	69	MEF2C
5f28_D	1e-20	1	69	1	69	MEF2C
6byy_A	1e-20	1	69	1	69	MEF2 CHIMERA
6byy_B	1e-20	1	69	1	69	MEF2 CHIMERA
6byy_C	1e-20	1	69	1	69	MEF2 CHIMERA
6byy_D	1e-20	1	69	1	69	MEF2 CHIMERA
6c9l_A	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	1e-20	1	69	1	69	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00609	ChIP-seq	Transfer from AT4G18960	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY464111	0.0	AY464111.1 Aquilegia alpina AGAMOUS-like protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001268105.1	1e-120	agamous-like MADS-box protein MADS1
Refseq	XP_010656929.1	1e-120	PREDICTED: MAD-box transcripion factor isoform X5
Swissprot	Q93XH4	1e-121	MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBL	A0A2G5C104	1e-162	A0A2G5C104_AQUCA; Uncharacterized protein
STRING	Aquca_136_00009.1	1e-162	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	7e-97	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Aqcoe4G024000.5.p

Publications ? help Back to Top
Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development. Plant Mol. Biol., 2001. 45(5): p. 541-53 [PMID:11414613] Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]