PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 618aa MW: 66426.9 Da PI: 8.8613

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G427600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Aqcoe3G427600.1.p 75 FICEVCNKGFQREQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	12.4	0.00047	151	173	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Aqcoe3G427600.1.p 151 WKCDKCSKRYAVQSDWKAHSKTC 173 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.9E-6	74	97	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.77E-7	74	97	No hit	No description
SMART	SM00355	0.0052	75	97	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	3.1E-5	75	97	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	75	97	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.1E-4	139	172	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.77E-7	146	171	No hit	No description
SMART	SM00355	140	151	171	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MASGSSSAPF FGIREEDQNQ IKQQQQSTPT SSTAPTTTPP TTTTQKKKRN LPGTPNPDAE 60 VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLKQKTTKE VKRKVYLCPE 120 PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS KTCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAQESARLP TGLNTMGSHL YGGSNMGLNL SQVGSQMSSL 240 QDQNHTSNDI LRLGGAGAQY DHLISPSNSS FRPPQPSPAS AFYLPSGSNQ DYHEDSQSHH 300 QLLQNKNFHG LMQLPELQSN ANNSSPAAAA AAANLFNLSF FSNSSTTSNM NNSSNANNNN 360 SNNHLSSSGL LMPDQFNSGN AGGEGTTLFS GNIMGDHMGN NVSSLYNTSV QSDNVLPQMS 420 ATALLQKAAQ MGSSTSGNSS TLLRGFGSSS SSNARSDRPH MSANFRGSFS SGGGGGGENL 480 RSQMENDNHL QDIMNNFANG GSQIFGSGSN SFGASGGHGQ ETSYAGFNSN RLSLDQQHGN 540 SNMSNMDEAK MHQNQLSASL GGSDRLTRDF LGVGGMVRSV SGGISQREQH HGLDISSLDS 600 EIKSATENRS FGSGSLQ*

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MASGSSSAPF FGIREEDQNQ IKQQQQSTPT SSTAPTTTPP TTTTQKKKRN LPGTPNPDAE  60
VIALSPKTLM ATNRFICEVC NKGFQREQNL QLHRRGHNLP WKLKQKTTKE VKRKVYLCPE  120
PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS KTCGTREYRC  180
DCGTLFSRRD SFITHRAFCD ALAQESARLP TGLNTMGSHL YGGSNMGLNL SQVGSQMSSL  240
QDQNHTSNDI LRLGGAGAQY DHLISPSNSS FRPPQPSPAS AFYLPSGSNQ DYHEDSQSHH  300
QLLQNKNFHG LMQLPELQSN ANNSSPAAAA AAANLFNLSF FSNSSTTSNM NNSSNANNNN  360
SNNHLSSSGL LMPDQFNSGN AGGEGTTLFS GNIMGDHMGN NVSSLYNTSV QSDNVLPQMS  420
ATALLQKAAQ MGSSTSGNSS TLLRGFGSSS SSNARSDRPH MSANFRGSFS SGGGGGGENL  480
RSQMENDNHL QDIMNNFANG GSQIFGSGSN SFGASGGHGQ ETSYAGFNSN RLSLDQQHGN  540
SNMSNMDEAK MHQNQLSASL GGSDRLTRDF LGVGGMVRSV SGGISQREQH HGLDISSLDS  600
EIKSATENRS FGSGSLQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-33	147	211	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-33	147	211	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208494	1e-134	AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270755.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_010270757.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-137	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2G5F7R0	0.0	A0A2G5F7R0_AQUCA; Uncharacterized protein
STRING	Aquca_002_01389.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-115	indeterminate(ID)-domain 5

Link Out ? help Back to Top
Phytozome	Aqcoe3G427600.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]