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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aqcoe3G424500.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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| Family | NAC | ||||||||
| Protein Properties | Length: 675aa MW: 77254.6 Da PI: 5.2359 | ||||||||
| Description | NAC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NAM | 180.2 | 5.2e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd+
Aqcoe3G424500.1.p 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKATGKDR 96
79****************************.99**************95334455777********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+v s + + vg+kktLv+y+grap+g++t Wvmheyrl
Aqcoe3G424500.1.p 97 KVNS-QMRSVGMKKTLVYYRGRAPHGTRTGWVMHEYRL 133
****.9999***************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101941 | 8.5E-64 | 4 | 156 | IPR003441 | NAC domain |
| PROSITE profile | PS51005 | 61.475 | 6 | 156 | IPR003441 | NAC domain |
| Pfam | PF02365 | 6.4E-30 | 7 | 133 | IPR003441 | NAC domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 675 aa Download sequence Send to blast |
MAPVTLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVNS QMRSVGMKKT LVYYRGRAPH 120 GTRTGWVMHE YRLDERECET ASGLQDAYAL CRIFKKSMVG PKTPEYNAPR LNVSHCQWTP 180 NDHSSNIEMS SEGGGADLEI TSYPFASGMY SSDVNQSASF DVNGTRDENK WMQYLTEEAF 240 GPTTPAFPSQ ESNMAYVPST VDIALECARL QHRLSLPPLE VEDFPQVSFN NSTFPQDRPL 300 HETREGGFLQ EIISATSTPQ ELINNTNYQD TWQGNYSYFD EFSLHEIEKV ENHQIDDIGS 360 SIPIEQPWGV DNRRFIDIGD MEEVFMTGKT VENLRGVGMS NKELEKSMFE EHKVVPIENI 420 SNFQRRNEQE NEGETSQHNF TDTDENDFSL GYVNDYQDGI LGDEGDMAGT PTFELHEKVE 480 VNHGMFIASR QAAKTFFYQI EPSKIVKVKL NEVLSHNFSI TKVKSYHSEI KNRPSFFDKF 540 KTFAREKFRG VRKFSMDSKR GSSVLNQTRS RVILIISLLL TTCIYLGEPC ESIRLQEDLS 600 ATSKNMEDIT EEDCSPYLKK VGEDKWNDDK MDSNISSRLT NLGGGHISSV FLNKKWSFLA 660 IILALFSFGF QKII* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1ut4_A | 3e-55 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-55 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-55 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-55 | 1 | 156 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 4e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 4e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 4e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 4e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 4e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 4e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 4e-55 | 1 | 156 | 15 | 168 | NAC domain-containing protein 19 |
| 4dul_A | 3e-55 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
| 4dul_B | 3e-55 | 1 | 156 | 12 | 165 | NAC domain-containing protein 19 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00212 | DAP | Transfer from AT1G65910 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010270697.1 | 0.0 | PREDICTED: NAC domain-containing protein 45 | ||||
| TrEMBL | A0A2G5F7N4 | 0.0 | A0A2G5F7N4_AQUCA; Uncharacterized protein | ||||
| STRING | Aquca_002_01358.1 | 0.0 | (Aquilegia coerulea) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G65910.1 | 1e-140 | NAC domain containing protein 28 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Aqcoe3G424500.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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