PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Basic Information? help Back to Top

TF ID

Aqcoe3G415000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Nin-like

Protein Properties

Length: 294aa MW: 32068.7 Da PI: 8.08

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G415000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	67.8	1.6e-21	22	67	3	48
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ++++++ +sk+F++pi+dAA +Lgvc +vLK+iCR +G+ RWP+Rk Aqcoe3G415000.1.p 22 ESLTFDGISKFFNMPIADAATNLGVCSSVLKKICRDNGLVRWPYRK 67 689******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.221	7	91	IPR003035	RWP-RK domain
Pfam	PF02042	7.6E-19	23	68	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MTTMSSSSTT TTQTTVTTTT IESLTFDGIS KFFNMPIADA ATNLGVCSSV LKKICRDNGL 60 VRWPYRKFLA GKSVEEIQKD AARERRREMI ELARAARQKD AATTSLYATT TILGQQGNNL 120 SQDGWQQGNN PSRDGGKQGS NPSQEGLSND MLYSGSARNL LAHLDEFKEG FPSNGLSTVT 180 MRWWGDHTSD ANDDEMLGEE SAIDGTNKQQ SHNAANKCME GKSDTTSEKS NIVPQGTALL 240 LSVRESAAAE GREALKLGVH GGYRSFKLNR REKMLLHKVF DSSLPSQWKI NSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241339.1	1e-84	PREDICTED: uncharacterized protein LOC104585973 isoform X1
TrEMBL	A0A2G5CH05	0.0	A0A2G5CH05_AQUCA; Uncharacterized protein
STRING	Aquca_057_00077.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	6e-10	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G415000.1.p