PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G406700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ZF-HD
Protein Properties Length: 181aa    MW: 19983.2 Da    PI: 8.1384
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G406700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.68e-301059557
        ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                        Y+eCl+NhAaslG++a+DGCgEf+ +   ++t+++lkCaACgCHRnFHR+ +
  Aqcoe3G406700.1.p 10 LYRECLRNHAASLGSYATDGCGEFTLD---DTTPDTLKCAACGCHRNFHRKVS 59
                       6*************************8...778******************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.7E-251059IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.0431158IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-171157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-241157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.7E-2792163IPR009057Homeodomain-like
SuperFamilySSF466898.07E-1592161IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-27102161IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MARDDDLRDL YRECLRNHAA SLGSYATDGC GEFTLDDTTP DTLKCAACGC HRNFHRKVSV  60
SIGSGAGKRG GNGGSFFGRD PDAVDLIEYG AGQSNESERG GKKRIRTKFS VEQKEKMLEF  120
AEKLGWRIKR KDGEEDEIEI FCRSIGVSRQ VFKVWMHNHK NSTSSPSPHF TANVSSSLTQ  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-201031651878ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022845031.12e-70zinc-finger homeodomain protein 11-like
SwissprotQ9SB619e-44ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A2G5F6Q31e-131A0A2G5F6Q3_AQUCA; Uncharacterized protein
STRINGAquca_002_01198.11e-132(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-43homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]