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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Aqcoe3G164300.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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| Family |
TCP |
| Protein Properties |
Length: 324aa MW: 34467.1 Da PI: 9.6324 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aqcoe3G164300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 126.5 | 2.7e-39 | 65 | 151 | 2 | 87 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87
a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+ +tgt++++as+ a++s+s+++ns s
Aqcoe3G164300.1.p 65 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIITATGTGTIPASALaAAGASVSQQGNSVS 151
789******************************************************************999655555555554333 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008361 | Biological Process | regulation of cell size |
| GO:1900056 | Biological Process | negative regulation of leaf senescence |
| GO:0005634 | Cellular Component | nucleus |
| GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 324 aa
Download sequence Send
to blast |
MDPKVSSKQP QKLVPKFLSL PPQDMSENNN NNNNNNNNNN KSAEIKDFQI VVQEKEKDEV 60
KKQLAPKRSS NKDRHTKVDG RGRRIRMPAL CAARIFQLTR ELGHKSDGET IQWLLQQAEP 120
SIITATGTGT IPASALAAAG ASVSQQGNSV STGLHHNDMG PTGMGSGSRT NWAMVGVGSN 180
LGRSSVPTGL WPSVTGLGSG FVPSSGGPGP GPGPSTSNLG TESSNFLPRI GFHGFELPGS 240
NLGQMSFSSI LNANSQQLPG LELGLSQEAH HIGVLNAQAL NQFYQQMGQN RGGPGPLHQH 300
QHQHQHQQQE QPPADDDSQG SRH*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
| Publications
? help Back to Top |
- Zhu P, et al.
Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
[PMID:27708161] - Wu JF, et al.
LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
Nat Commun, 2016. 7: p. 13181
[PMID:27734958] - Guan P, et al.
Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
[PMID:28202720] - Guan P
Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
Front Plant Sci, 2017. 8: p. 1697
[PMID:29033968] - Zhang N, et al.
MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
Plant J., 2018. 93(1): p. 66-78
[PMID:29086441] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
Plant Physiol., 2018. 176(2): p. 1694-1708
[PMID:29133375] - Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
Microbes Environ., 2017. 32(4): p. 314-323
[PMID:29187692]
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