PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G089000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 568aa    MW: 62684.9 Da    PI: 5.8338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G089000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011386408123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ CgksFs++  L  H ++H
  Aqcoe3G089000.1.p 386 HYCNLCGKSFSSHQALGGHKSSH 408
                        68**************9999988 PP
2zf-C2H211.10.0012439461123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+ksF +   L  H+r+H
  Aqcoe3G089000.1.p 439 HQCKICSKSFHSGQALGGHQRSH 461
                        79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.6E-7386409IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.177386413IPR007087Zinc finger, C2H2
SuperFamilySSF576672.18E-6386461No hitNo description
SMARTSM003550.15386408IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280388408IPR007087Zinc finger, C2H2
PfamPF139127.7E-10438462IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325439466IPR007087Zinc finger, C2H2
SMARTSM003550.039439461IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280441461IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MMMDVDDDDD DKKEKKKMSP EEEEAEKLRI EKLVATSSYY IWGQNPYSLQ YPEESDPQES  60
SLTSTKKEKN VVKKKKKKLL SGIGGGHGGS SSSSKICRDE NQGLQLRKRV SVEDEVKKQV  120
DHHCKVLGNQ KGLKFIISLK TKPENPNEEE CVQEKPTNDD IKSHSTGTLS PSVAEKLGSP  180
DYSIPSTSRN IIAVDSMNKS SPNLVINTEG GLELDLATIG WGDNVKRGRR AITKEEAAKK  240
KRKRDGAYTG NEQQNPHLLL HDNDNEDDDQ DLVNTSTQLD ELETRVQPEV EVDENNSNRS  300
SENVLGQRMC LIIPKYFKHM KSGTSSCGDD KVEGDKSIRS AFRTNNNMLS HYALETGAAS  360
ENKDTAEGGN SEIYIMQKKS VIDGKHYCNL CGKSFSSHQA LGGHKSSHSI KKIKDGPTLA  420
NDAALEHDTR NGLVLNPTHQ CKICSKSFHS GQALGGHQRS HYLQPTVPVG KELTLDLKLA  480
PVENELASDL KPVPVVKELD FDHFDPKSDT VVGGSPKVPK SEIPHQRELD IDLNALPEME  540
GGEDLQLASN ELSLDIPQPI QVVFSDQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17178VKKKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5C9K70.0A0A2G5C9K7_AQUCA; Uncharacterized protein
STRINGAquca_074_00059.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.11e-13C2H2 family protein