PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Aqcoe3G085900.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HD-ZIP

Protein Properties

Length: 226aa MW: 25647.5 Da PI: 5.8204

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe3G085900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.5e-18	23	76	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Aqcoe3G085900.2.p 23 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARVLGLQPRQIAIWFQNRRARWK 76 456899***********************************************9 PP
2	HD-ZIP_I/II	130.6	6.1e-42	22	114	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE++Fe +kLeperK++lar Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k++n++L++++++L++e++ Aqcoe3G085900.2.p 22 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARVLGLQPRQIAIWFQNRRARWKTKQLEKDYDILKRQFDAVKDNNDALQAQNKKLQAEIM 113 69**************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 + Aqcoe3G085900.2.p 114 A 114 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-19	14	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	18	78	IPR001356	Homeobox domain
SMART	SM00389	2.6E-17	21	82	IPR001356	Homeobox domain
CDD	cd00086	3.57E-15	23	79	No hit	No description
Pfam	PF00046	3.7E-15	23	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.8E-19	25	85	IPR009057	Homeodomain-like
PRINTS	PR00031	1.8E-5	49	58	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	53	76	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.8E-5	58	74	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.1E-16	78	117	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSFSGVENGD EDLSDDGSQA GEKKRRLNME QVKTLEKNFE LGNKLEPERK MQLARVLGLQ 60 PRQIAIWFQN RRARWKTKQL EKDYDILKRQ FDAVKDNNDA LQAQNKKLQA EIMALKGGEP 120 TESINLNKET EGSCSNRSEN SSEINLDISR TPAIDSPLSS NPSRPLFPTS MRPASIVQLL 180 QSSSRADAHC QKSQNPTQEE SICHIFNAID DQPSFWPWSE NQQYH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	78	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010242413.1	1e-130	PREDICTED: homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	2e-89	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A2G5C9H3	1e-165	A0A2G5C9H3_AQUCA; Uncharacterized protein
STRING	Aquca_074_00028.1	1e-165	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	8e-92	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe3G085900.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]