PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G048600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family TCP
Protein Properties Length: 482aa    MW: 53969.1 Da    PI: 8.4805
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G048600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.62.5e-431362893133
                TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec....... 73 
                         kkdrh ki T++g+RdRR+Rls+++a+rfF +qd+LGfdk+skt+eWLl+++k+aikel ++              s ssasec       
  Aqcoe3G048600.1.p 136 IKKDRHTKIVTAQGPRDRRMRLSLDIARRFFMVQDMLGFDKASKTVEWLLTKSKEAIKELSRSvshqsklsctgsvkSVSSASECevvsgid 227
                        79*************************************************************86666666665555555555554444433 PP

                TCP  74 .eaesssssasnsssg.............kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                                       +             k++     +++ +q+++a+++ lakesrakarararert ek   +
  Aqcoe3G048600.1.p 228 yM-------------TtdeylqqvnmsseKSSGGVVkERRTKQTRKATFNPLAKESRAKARARARERTIEKIWSR 289
                        31.............033333344444433333333356666777777899999**************9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136935.642137195IPR017887Transcription factor TCP subgroup
PfamPF036347.0E-45137286IPR005333Transcription factor, TCP
PROSITE profilePS5137011.753268285IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVVSVSPSIN VTYQMTRMFN RPIFPPSPSF FDSTDEDIHF FHQQHHHHHH HPHLLLPHFL  60
ENQQLPLLTR DTSTERIETH PQINRETNMN KYNYDRGGSG SGSGGGNGGG GESESIIVGN  120
KKNSNLCEKN PRRRSIKKDR HTKIVTAQGP RDRRMRLSLD IARRFFMVQD MLGFDKASKT  180
VEWLLTKSKE AIKELSRSVS HQSKLSCTGS VKSVSSASEC EVVSGIDYMT TDEYLQQVNM  240
SSEKSSGGVV KERRTKQTRK ATFNPLAKES RAKARARARE RTIEKIWSRS QHCPEVRHHK  300
LHKIRSSSTS FEIGEESGSQ SHDDLKSSMD VATETEPSSH SIDCQGSIQD IVDESFAVTN  360
KASSPSIFDY HHDMEISQVL APNNNSFPNF SGNTWDIDSS GTGSSYSFIM NMNLSPGNLH  420
DHIITISNSA GLGSPTTIQV YSTVNNNIPN PPFLSSVSYF ESNSLMFLSA HYTFSFSVMK  480
Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4019800.0KJ401980.1 Aquilegia ecalcarata CYC-like protein 1 (CYL1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265281.11e-78PREDICTED: transcription factor DICHOTOMA
TrEMBLA0A2G5D7W40.0A0A2G5D7W4_AQUCA; Uncharacterized protein
STRINGAquca_026_00208.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.14e-27TCP domain protein 12