PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G046600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 307aa    MW: 34290.1 Da    PI: 7.4089
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G046600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05131150120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++C+ C+k+F+r  n++ H+
  Aqcoe3G046600.1.p 131 FSCTVCNKTFNRYNNMQMHM 150
                        89*****************9 PP
2zf-C2H214.30.00012216238123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk+F  + + ++H +++
  Aqcoe3G046600.1.p 216 FGCRKCGKTFAVRGDWRTHEKNC 238
                        56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF128741.1E-4131150No hitNo description
PROSITE profilePS5015710.367131158IPR007087Zinc finger, C2H2
SMARTSM003550.079131153IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-6131150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.06E-7131153No hitNo description
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
SMARTSM00355210179211IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-5202236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.06E-7211236No hitNo description
SMARTSM0035569216236IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MQTPFFTHFS SSTTTTTHIS SSESACFDEE DQDEDSIFLT LCPPGQHHIS KSHDHHHYSN  60
LQSTSSNQIE FNSTNYCNDQ ESVTVALHIG LPSASANQSS IGTSTTITGI PVEGQYWIPS  120
PAQILVGPTQ FSCTVCNKTF NRYNNMQMHM WGHGSQYRKG PESLRGTTPA SPMLRLPCYC  180
CAKGCKNNIE HPRSKPLKDF RTLQTHYKRK HGAKPFGCRK CGKTFAVRGD WRTHEKNCGK  240
LWFCICGSDF KHKRSLKDHI RAFGGGHGAH GTELCELDDE DDDEGEQQGN VVGNHDDLVG  300
RRFNLY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262985.11e-143PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-115ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2G5D8T80.0A0A2G5D8T8_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_026_00228.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-114C2H2-like zinc finger protein