PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G273800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 573aa    MW: 64498.5 Da    PI: 5.0666
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G273800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.52.3e-961835522374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsP 89 
                         + Ll++Ae v ++++e+a++lL++  +las +g+p+qR++ yf+eAL++r+ r   e+ ++ + ++t+e + ++++++l+     ++e  P
  Aqcoe2G273800.1.p 183 AHFLLAAAEKVGNKQFERANKLLSQCDHLASITGNPVQRVVYYFAEALQERIDR---ETGRSASGKQTQELDFEQAMMSLNPavmgYYERLP 271
                        689***************************************************...55555555555544444444443335567****** PP

               GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        + ++ +++  q+I + v ++++vH iD++i  G+QW+ L++aLasR e p   ++iT++g  +  s++++eetg+rL+ fAe++++pf+f++
  Aqcoe2G273800.1.p 272 FSQMLQVAVSQTIIDHVGSAKKVHLIDLGIRTGMQWIVLMHALASRGECPVeLFKITAIGTIA--SQQKIEETGRRLSGFAESINIPFSFKI 361
                        **********************************************97665489*******55..*************************** PP

               GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                        +++++++dl+ + ++++ +Ea+aV + + l+++  ++ +le+    +++++k+++P ++vv+e ea+hns+ F++rf+e+l +ysa+fds+e
  Aqcoe2G273800.1.p 362 VTVSHMKDLKEDLFELEAEEAVAVFSPMVLKTMIGQPDHLEN----LMNVIKNINPCIMVVTEIEANHNSPIFVNRFIETLFFYSAFFDSFE 449
                        **********************************99999999....********************************************** PP

               GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                        a   r++++r++ E++++ + i+n+va+eg+er++rh   + W+  ++++G+ + +lse+   qa+l+++k++ +   +v+ + ++l+ gWk
  Aqcoe2G273800.1.p 450 ACTDRTDHNRMMAEKVFIYQTIRNIVATEGQERTMRHVGINVWKTFFSQFGMVETELSESSLYQARLVIEKFAcGGSCTVDMKGKCLTVGWK 541
                        *************************************************************************66669************** PP

               GRAS 364 drpLvsvSaWr 374
                        + p  s+SaW+
  Aqcoe2G273800.1.p 542 GTPFHSLSAWK 552
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.515156531IPR005202Transcription factor GRAS
PfamPF035147.9E-94183552IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MANTYFSFEP FSSSGYQNGY GSLQDDLMKG VNKEGQARMF HETSEERVMF SKYHGDTFTD  60
FGMSEKTVYS QMEICPDSPN FDTILQEISV FADYKMEKPE QISSASLKLL SDYRSGLKKS  120
NEEKEIQQSD GGRLSTEEVI RVAGARYIQL YVQTDDDLSM LGHPFGCALF GLSTEEIKDV  180
ELAHFLLAAA EKVGNKQFER ANKLLSQCDH LASITGNPVQ RVVYYFAEAL QERIDRETGR  240
SASGKQTQEL DFEQAMMSLN PAVMGYYERL PFSQMLQVAV SQTIIDHVGS AKKVHLIDLG  300
IRTGMQWIVL MHALASRGEC PVELFKITAI GTIASQQKIE ETGRRLSGFA ESINIPFSFK  360
IVTVSHMKDL KEDLFELEAE EAVAVFSPMV LKTMIGQPDH LENLMNVIKN INPCIMVVTE  420
IEANHNSPIF VNRFIETLFF YSAFFDSFEA CTDRTDHNRM MAEKVFIYQT IRNIVATEGQ  480
ERTMRHVGIN VWKTFFSQFG MVETELSESS LYQARLVIEK FACGGSCTVD MKGKCLTVGW  540
KGTPFHSLSA WKFNKLESTP SQSESIGLIL SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-4020555226375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2539378e-76AC253937.1 Aquilegia coerulea clone COL08-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060869.10.0DELLA protein RGL1-like
TrEMBLA0A2G5EZB60.0A0A2G5EZB6_AQUCA; Uncharacterized protein
STRINGAquca_003_00539.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-58RGA-like 1