PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G140100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 320aa    MW: 36575.7 Da    PI: 9.2657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G140100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.92e-06158177120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C+k+Fsr  n++ H+
  Aqcoe2G140100.1.p 158 FSCPVCDKTFSRYNNMQMHM 177
                        89*****************9 PP
2zf-C2H217.21.4e-05242264123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C +CgksF  k + ++H +++
  Aqcoe2G140100.1.p 242 FSCRKCGKSFAVKGDWRTHEKNC 264
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.367158185IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-7158177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.0E-4158177IPR007087Zinc finger, C2H2
SMARTSM003550.025158180IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.36E-8158180No hitNo description
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
SMARTSM00355230205237IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.8E-6228262IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-8237262No hitNo description
SMARTSM0035534242262IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.891242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGIRNYHEYN KLELVLQAPS FVEWLTPPAT SLSSSSSSSS KLQQTPYTTS MKFLKLPLFY  60
QNDQDELLEK KNKCLPLLNS FNENLKQEKV INDENLGERV TVALHIGLPN NDSFDGETKL  120
PVSYKDEKIK SIKKTSLNSE SRFWIPTPAQ ILLGPTQFSC PVCDKTFSRY NNMQMHMWGH  180
GSQYRRGPDS LKGTQPTAML KLPCYCCAHG CKNNINHPRA KPLKDFRTLQ THYKRKHGAK  240
PFSCRKCGKS FAVKGDWRTH EKNCGKLWYC ICGSDFKHKR SLKDHVRSFG DDHSPHPCHQ  300
SLEDQKECIT GSEDEIRSK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028071029.11e-143zinc finger protein WIP3-like
SwissprotQ9SGD11e-116ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2G5ETH90.0A0A2G5ETH9_AQUCA; Uncharacterized protein
STRINGAquca_004_00109.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-116WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]