PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Basic Information? help Back to Top

TF ID

Ahy021998

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 333aa MW: 35699.9 Da PI: 6.228

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59539733	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121	6.6e-38	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+++C++apyfpa++p++f++vh++FGasnv k+l++lp+++re+a++sl++eAear+ dPvyG++ + lq++l+q +a la +k+e Ahy021998 7 PCAACKFLRRKCTPECIFAPYFPANNPERFECVHRVFGASNVGKILNELPPSQREEAVESLAFEAEARQCDPVYGCTLQVCILQKKLRQRRALLANAKRE 106 7******************************************************************************************999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.35	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-37	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSSTPTPCAA CKFLRRKCTP ECIFAPYFPA NNPERFECVH RVFGASNVGK ILNELPPSQR 60 EEAVESLAFE AEARQCDPVY GCTLQVCILQ KKLRQRRALL ANAKRELSAY INIQGPFNLQ 120 EKPLSSPAAH VGPPCSPNVV QYSPILGPSY GLDVVQSSAH LGLSDCPDDA PFFMPAIQHN 180 GSLGGGGAAD PKLDPGQQEL LEAQQLAAAA AIREQQQAIM MRNYVQQQQQ EYLRHYAAAG 240 IEPVAAAAAV TSVEXGVFGH MGAPSGGQGG EMAPCMGLET FDSGGSYHRQ LQQQPQHEVG 300 ENFVGLATQH QYPLGGPVAA PIRAARTTVD PTX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-38	7	110	11	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-38	7	110	11	114	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020985221.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_020985222.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_020985224.1	0.0	LOB domain-containing protein 36-like
TrEMBL	A0A445EXF9	1e-155	A0A445EXF9_ARAHY; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	6e-38	LBD family protein