PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Ahy021094

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 323aa MW: 35457.8 Da PI: 8.1017

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59511239	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Ahy021094 33 WKCEKCSKKYAVQSDWKAHSKTC 55 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.1E-4	21	54	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
PEPSCVHHNP SRALGDLTGI KKHFCRKHGE KKWKCEKCSK KYAVQSDWKA HSKTCGTREY 60 RCDCGTLFSR RDSFITHRAF CDALAQETAR TTTTTSTTTI PQLHHQFNNP QIFPLKKEPL 120 QLHHQSFNLV RTELPPWLGS SSSSSNTPTP SQNNHQGQDF LNLHENNENP NPNPNPNPRL 180 VGVGGPTIEG YPSAHMSATA LLQKAAQMGA TMSSSIGPHH QSHVSVNPSA TLNHFPLNLS 240 SRDHHHHNHN HITTTTTTTT TTTAAPSSSS SLLHDVMMMN SFSSGFEAAQ FDDPFGGILV 300 SNNNITKKDG DDNGNGNDGN NNX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-37	29	93	3	67	Zinc finger protein JACKDAW
5b3h_F	2e-37	29	93	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016176182.1	1e-180	protein indeterminate-domain 7
Refseq	XP_025676394.1	1e-180	protein indeterminate-domain 7
Swissprot	Q8H1F5	8e-60	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A444XDN4	1e-178	A0A444XDN4_ARAHY; Uncharacterized protein
STRING	GLYMA08G20520.2	8e-94	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	9e-47	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]