PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ahy015859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YA | ||||||||
Protein Properties | Length: 279aa MW: 30683.6 Da PI: 9.3557 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.5 | 6.9e-31 | 175 | 231 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RRq Rakle+++kl ++ rkpylheSRh hAl+R+Rg gGrF Ahy015859 175 EEPIYVNSKQYHAILRRRQYRAKLEAHNKL-IRDRKPYLHESRHLHALKRARGAGGRF 231 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.6E-35 | 173 | 234 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.126 | 174 | 234 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.3E-26 | 176 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.8E-23 | 177 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 179 | 199 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.8E-23 | 208 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MKCMCEKESA LCSVHATPAY VLGCSSSWGN SPESDVVQQS SMSDKLNLNM GVVLPQQCHK 60 SRPLNLQFQE QDSSSTLSTN QSGQISIQHS NSSACSSSLS RNMEKSAGNQ ISSSMGILDF 120 SFPPSELDRG QSTAPIAFHC AYPCYGGILA AAYDQHSKVI GSAAVRIPLP LDLREEPIYV 180 NSKQYHAILR RRQYRAKLEA HNKLIRDRKP YLHESRHLHA LKRARGAGGR FLNTKNLVQS 240 KVTSTTTTSS YQAYIGRDIQ DYTADTGGAA SHRRLSVLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-20 | 175 | 235 | 2 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025613723.1 | 0.0 | nuclear transcription factor Y subunit A-8 isoform X1 | ||||
TrEMBL | A0A444Y8P7 | 0.0 | A0A444Y8P7_ARAHY; Uncharacterized protein | ||||
STRING | XP_007135485.1 | 5e-86 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 2e-47 | nuclear factor Y, subunit A8 |