PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Publication

Basic Information? help Back to Top

TF ID

Ahy015174

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 639aa MW: 72462 Da PI: 5.2024

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59511629	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	350.1	3.5e-107	272	636	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lL++cA+av++ d+++a +L+++++++sp+gd mqR+a+yf+ +L++rl+ ++ + lp +s ++ l+a+kl++ +sP+ ++++ a q+I Ahy015174 272 SLLTRCAQAVANYDQRNAYDTLKQIRQHSSPAGDGMQRMAHYFAIGLETRLNA---GTPSYLPLDMAS---AADMLKAHKLYVTASPLQRMTNTFATQTI 365 79************************************************9...455555666665...899********************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 ++ v++e++vHiiDf+i +G+QWp+L++ L++R + p +lRiTg++ p++g +e+leetg+rL++++++ +vpfe+n +a+++e+++le+L+++++E Ahy015174 366 MNLVQNESCVHIIDFGICYGFQWPCLIKRLSQR-NAPIKLRITGIDLPQPGfrPAERLEETGRRLENYCKRHNVPFEYNC-IAQKWETIRLEDLKIDRNE 463 ****************************9.5668********9*************************.7************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 +++Vn+ ++l++l+de+v ++s+rd+vLkl++s++P+++ + + +++++ Fl+rf eal ++s+ fd++ea++pre+ er+ +E+ l+gr++ nv+ac Ahy015174 464 VTVVNCFYRLKNLPDETVLVNSPRDAVLKLIRSINPNIFLHGVVNGSYSAPFFLTRFREALFHFSSQFDMFEANVPREDVERMILEKGLIGRDAINVIAC 563 ************************************************************************************************ PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 egaer+er et+++W+ r ++aGFk+++++++ ++++k +++k + + + v+++ +++++gWk+r L ++SaW Ahy015174 564 EGAERVERPETYKQWQIRNKRAGFKQIRVDQELVNEIKGMVKKEYHRDFVVDQDGKWVLQGWKGRILHALSAW 636 *****************************************999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.674	244	617	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-104	272	636	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MNGFHYEGSS YSPGTSSSED SAEYNKYSNP ILRYISDILM EEEDDLENKP CMLQQCLKLQ 60 AAEKSFSEVL GNSSNSIPSQ GCDENNRDGD YGRTTSFESY SSCTTDNNSY ESDWVNLVGE 120 YESSLLQAPD NDSYESDWLN LLDSPNDGSS EIHYQNMVLL TNNEEGSRSG TTGTREKRSI 180 QVDDDTSYEQ GRRGSKISAV FSDESEPPEI LDEVLRVQIG RSQCLSGVEP LPENEMLKRQ 240 NVDSVGSSGK TARSKKGSSR NSNTGATVDL WSLLTRCAQA VANYDQRNAY DTLKQIRQHS 300 SPAGDGMQRM AHYFAIGLET RLNAGTPSYL PLDMASAADM LKAHKLYVTA SPLQRMTNTF 360 ATQTIMNLVQ NESCVHIIDF GICYGFQWPC LIKRLSQRNA PIKLRITGID LPQPGFRPAE 420 RLEETGRRLE NYCKRHNVPF EYNCIAQKWE TIRLEDLKID RNEVTVVNCF YRLKNLPDET 480 VLVNSPRDAV LKLIRSINPN IFLHGVVNGS YSAPFFLTRF REALFHFSSQ FDMFEANVPR 540 EDVERMILEK GLIGRDAINV IACEGAERVE RPETYKQWQI RNKRAGFKQI RVDQELVNEI 600 KGMVKKEYHR DFVVDQDGKW VLQGWKGRIL HALSAWVPA

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MNGFHYEGSS YSPGTSSSED SAEYNKYSNP ILRYISDILM EEEDDLENKP CMLQQCLKLQ  60
AAEKSFSEVL GNSSNSIPSQ GCDENNRDGD YGRTTSFESY SSCTTDNNSY ESDWVNLVGE  120
YESSLLQAPD NDSYESDWLN LLDSPNDGSS EIHYQNMVLL TNNEEGSRSG TTGTREKRSI  180
QVDDDTSYEQ GRRGSKISAV FSDESEPPEI LDEVLRVQIG RSQCLSGVEP LPENEMLKRQ  240
NVDSVGSSGK TARSKKGSSR NSNTGATVDL WSLLTRCAQA VANYDQRNAY DTLKQIRQHS  300
SPAGDGMQRM AHYFAIGLET RLNAGTPSYL PLDMASAADM LKAHKLYVTA SPLQRMTNTF  360
ATQTIMNLVQ NESCVHIIDF GICYGFQWPC LIKRLSQRNA PIKLRITGID LPQPGFRPAE  420
RLEETGRRLE NYCKRHNVPF EYNCIAQKWE TIRLEDLKID RNEVTVVNCF YRLKNLPDET  480
VLVNSPRDAV LKLIRSINPN IFLHGVVNGS YSAPFFLTRF REALFHFSSQ FDMFEANVPR  540
EDVERMILEK GLIGRDAINV IACEGAERVE RPETYKQWQI RNKRAGFKQI RVDQELVNEI  600
KGMVKKEYHR DFVVDQDGKW VLQGWKGRIL HALSAWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-36	276	638	25	380	Protein SCARECROW
5b3h_A	1e-36	276	638	24	379	Protein SCARECROW
5b3h_D	1e-36	276	638	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029150847.1	0.0	scarecrow-like protein 11
Swissprot	Q9XE58	1e-163	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A444Y8F7	0.0	A0A444Y8F7_ARAHY; Uncharacterized protein
STRING	XP_007150339.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-165	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]