PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Publication

Basic Information? help Back to Top

TF ID

Ahy014195

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 135aa MW: 14706.6 Da PI: 8.7115

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59541751	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	62.6	1e-19	1	59	42	100
DUF260 42 vlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 v+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ael+++++e Ahy014195 1 VSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISTLQHQVQSLQAELNAVRSE 59 689****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	4.5E-18	1	57	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	12.96	1	60	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
VSKMLMEVPE CQRADAANSL VYEANVRLRD PVYGCMGAIS TLQHQVQSLQ AELNAVRSEI 60 LKYKLREANN NIIIPSSHHH LPMLPSSGAA VSVAAPPPPP PPLPPNSLPP ISSSSSSMYI 120 QQQQRPPTNY SRIPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-20	1	70	52	121	LOB family transfactor Ramosa2.1
5ly0_B	5e-20	1	70	52	121	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025623426.1	2e-90	LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-31	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A445B5Q2	5e-89	A0A445B5Q2_ARAHY; Uncharacterized protein
STRING	GLYMA06G15050.1	9e-47	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	2e-32	LOB domain-containing protein 13

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]