PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ahy012088
Organism
Arachis hypogaea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 735aa    MW: 80988.3 Da    PI: 6.4035
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Ahy#S59551962PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2067122156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++  +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Ahy012088  67 KKGYHRHTQHQIHEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 122
                5778899**********************************************998 PP
2START200.29.1e-632624821206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                ela +a++el ++a++++p+Wv+s     e++n+de+l++f++  v        ++e +r+s+v +m++++lve+l+d++ qW++++     +a tlev+
  Ahy012088 262 ELAVAAMEELTRLAQVGDPLWVQSNqhctEILNEDEYLRTFPPR-VigpkalgLRSESSRESAVIIMNHTKLVEILMDVN-QWSTMFCgivsRALTLEVL 359
                57899************************************995.559********************************.******999********** PP

                CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
      START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                s+g      galq+m+ae+q+ splvp R+ +fvRy++++++g+w++vdvS+++e+      s+    ++pSg+lie+++ng+skvtw+ehv++++r +h
  Ahy012088 360 STGvagnynGALQVMSAEFQVASPLVPsRENYFVRYCKEHPDGRWTVVDVSLENESRSRR--SSR---RRPSGCLIEELPNGYSKVTWIEHVEVDDRGVH 454
                ******************************************************999763..333...59****************************** PP

                HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 179 wllrslvksglaegaktwvatlqrqcek 206
                 l+++lvk gla+gak+w+atl+rqce+
  Ahy012088 455 TLYKPLVKCGLAFGAKRWMATLERQCER 482
                **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-2251122IPR009057Homeodomain-like
SuperFamilySSF466892.09E-1951124IPR009057Homeodomain-like
PROSITE profilePS5007116.3964124IPR001356Homeobox domain
SMARTSM003892.1E-1966128IPR001356Homeobox domain
PfamPF000464.2E-1867122IPR001356Homeobox domain
CDDcd000862.24E-1867125No hitNo description
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084841.658253485IPR002913START domain
SuperFamilySSF559616.53E-34254484No hitNo description
CDDcd088757.11E-109257481No hitNo description
SMARTSM002341.4E-62262482IPR002913START domain
PfamPF018523.6E-53263482IPR002913START domain
Gene3DG3DSA:3.30.530.207.1E-6327477IPR023393START-like domain
SuperFamilySSF559612.47E-20500718No hitNo description
PROSITE profilePS5084810.122528611IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
XESMFPTNVF DSHQQHMMLD MSSSHNESDL GIRTGDDEFF DIKSATEIVM EAPSGDDEQD  60
PNQRPKKKGY HRHTQHQIHE MEAFFKQCPH PDDKQRKELS RELGLEPLQV KFWFQNKRTQ  120
MKAQHERHEN AILKAENEKL RAENSRYKEA LSNATCPNCG GPAALGEMSF DEQHLRIENA  180
RLKQEIDRIS GIAEKYVGKP VTSSHNSNHM APHSRSLDLG VGSYGGGSQS SAGGMVGEMY  240
GGSELLRPFP VPCDSDKPRI VELAVAAMEE LTRLAQVGDP LWVQSNQHCT EILNEDEYLR  300
TFPPRVIGPK ALGLRSESSR ESAVIIMNHT KLVEILMDVN QWSTMFCGIV SRALTLEVLS  360
TGVAGNYNGA LQVMSAEFQV ASPLVPSREN YFVRYCKEHP DGRWTVVDVS LENESRSRRS  420
SRRRPSGCLI EELPNGYSKV TWIEHVEVDD RGVHTLYKPL VKCGLAFGAK RWMATLERQC  480
ERVASYIGGG AGELCGTSAE GRRSMLKLAE RMVMSFCTGV GASTAHAWTT LSSDMDDVRV  540
MTRKSMDDPG RPPGIVLCAA TSFSLPVPPN TLFHFLRDQN SRSQWDILSN RGLVQEITHI  600
ASSSNALSLL RVNSVNSSQS NMLILQESCT DCSGSYVVYA PVDMAAMNII LSGGDPDYLA  660
LLPSGFAILP DGLAASSGGS LLTVAFQILV DSAPTAKLSL GSVATVNTLI KCTVERIKAA  720
AFLTPPHFTT LLPSX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978973.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A444Z7E40.0A0A444Z7E4_ARAHY; Uncharacterized protein
STRINGGLYMA01G45070.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]