PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Ahy012054

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 504aa MW: 54586.6 Da PI: 9.2051

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59545552	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3.1e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Ahy012054 61 FICEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.2	0.0011	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Ahy012054 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.28E-7	60	83	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.3E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	61	83	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.0E-5	61	83	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	102	132	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.5E-4	125	158	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.28E-7	132	157	No hit	No description
SMART	SM00355	150	137	157	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
PHSHTSTTTT NNNNNNTNAS NTNSQPPPPP PKKKRNLPGN PDPSAEVIAL SPTTLMATNR 60 FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSAEVRKR VYVCPESSCV HHNPARALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT IFSRRDSFIT 180 HRAFCDALAE ENNNKKNEGS LFPNIPSNLQ SQPQIPNLLL PSLPITTTPT TLSSSSSLPL 240 HHDLIIPNPS FNNIPFPRNP NTTTTTTTTT TSHPSLQLTS TIFDDNALHL TASSSSLSSP 300 HMSATALLQK AAQMGATVSS SNNNNNMVVE NSNKGGGYVT ATTSMAPPSF SGVAPMQQNV 360 NNNNNSLFMN QFMQQDMATT PHHYGNLMCG MNGVDMFNAI LDQSKALSKI IDHSNHHRES 420 AVTKRECTKG GSIGGNSDVM TLDLLGIGGG GGGGHNGSGG FYGGGNNNNN QQQGDNNGAA 480 SVRDEVWNWS TKNAGFESFS ATSS

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

PHSHTSTTTT NNNNNNTNAS NTNSQPPPPP PKKKRNLPGN PDPSAEVIAL SPTTLMATNR  60
FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSAEVRKR VYVCPESSCV HHNPARALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT IFSRRDSFIT  180
HRAFCDALAE ENNNKKNEGS LFPNIPSNLQ SQPQIPNLLL PSLPITTTPT TLSSSSSLPL  240
HHDLIIPNPS FNNIPFPRNP NTTTTTTTTT TSHPSLQLTS TIFDDNALHL TASSSSLSSP  300
HMSATALLQK AAQMGATVSS SNNNNNMVVE NSNKGGGYVT ATTSMAPPSF SGVAPMQQNV  360
NNNNNSLFMN QFMQQDMATT PHHYGNLMCG MNGVDMFNAI LDQSKALSKI IDHSNHHRES  420
AVTKRECTKG GSIGGNSDVM TLDLLGIGGG GGGGHNGSGG FYGGGNNNNN QQQGDNNGAA  480
SVRDEVWNWS TKNAGFESFS ATSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-32	133	191	3	61	Zinc finger protein JACKDAW
5b3h_F	2e-32	133	191	3	61	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025619024.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1
Swissprot	Q9SCQ6	1e-115	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A445BKJ5	0.0	A0A445BKJ5_ARAHY; Uncharacterized protein
STRING	XP_007144938.1	1e-179	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	9e-98	C2H2 family protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]