PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Publication

Basic Information? help Back to Top

TF ID

Ahy009982

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 359aa MW: 39426.5 Da PI: 5.5422

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59555919	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	399.9	2.6e-122	31	357	1	345
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lv++L++cA+a+++++l la+ l+++ s las++g +m+++aa f ALa+r+++ a+p ++ s ++ s+ l++ f+e++P+lkf+h+taNq Ahy009982 31 LVHALMACAQAIQEEKLDLADVLVNHASVLASQQGGAMRKVAANFSHALARRIYG-------AFPEESMS-SSLSDMLHV--HFYETCPYLKFAHFTANQ 120 689**************************************************.......45544444.567777777..4************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 aIlea++++++vH+iDf+++qGlQWpaL+qaLa Rp+gpps+R+Tg+g+ +++++++l+++g+rL+++A++++v+fef+ + +++l+dl++ +L++kpgE Ahy009982 121 AILEAFSSATAVHVIDFGLKQGLQWPALMQALALRPGGPPSFRLTGIGPTSPEDTDTLQQVGWRLSQLARTIQVRFEFRGFGCNSLSDLDPTALDIKPGE 220 ***********************************************9******************************************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 ++aVn v++lhr+l++++sle vL++vk+++P++v+vveqea+hn++ F+erf+ea++yys+lfds+e ++ +e+ ++++++lgr+i+nvvac Ahy009982 221 SVAVNAVFELHRMLAKPGSLER----VLNTVKNIEPEIVTVVEQEANHNGPVFFERFTEAMHYYSSLFDSMEGSV----NEDGTLSEVYLGRQICNVVAC 312 ******************....********************************************6....9999************* PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 eg++r+erhetl++Wr r+++aGF+p++l+++a qa++ll+ ++ Ahy009982 313 EGEDRVERHETLAQWRVRMGSAGFEPIRLGSNAFRQARMLLALFA 357 ***************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.391	5	359	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.0E-120	31	357	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
XAVTETVKSQ VEPHSDLTCH CVAVEDTGVR LVHALMACAQ AIQEEKLDLA DVLVNHASVL 60 ASQQGGAMRK VAANFSHALA RRIYGAFPEE SMSSSLSDML HVHFYETCPY LKFAHFTANQ 120 AILEAFSSAT AVHVIDFGLK QGLQWPALMQ ALALRPGGPP SFRLTGIGPT SPEDTDTLQQ 180 VGWRLSQLAR TIQVRFEFRG FGCNSLSDLD PTALDIKPGE SVAVNAVFEL HRMLAKPGSL 240 ERVLNTVKNI EPEIVTVVEQ EANHNGPVFF ERFTEAMHYY SSLFDSMEGS VNEDGTLSEV 300 YLGRQICNVV ACEGEDRVER HETLAQWRVR MGSAGFEPIR LGSNAFRQAR MLLALFAGG

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

XAVTETVKSQ VEPHSDLTCH CVAVEDTGVR LVHALMACAQ AIQEEKLDLA DVLVNHASVL  60
ASQQGGAMRK VAANFSHALA RRIYGAFPEE SMSSSLSDML HVHFYETCPY LKFAHFTANQ  120
AILEAFSSAT AVHVIDFGLK QGLQWPALMQ ALALRPGGPP SFRLTGIGPT SPEDTDTLQQ  180
VGWRLSQLAR TIQVRFEFRG FGCNSLSDLD PTALDIKPGE SVAVNAVFEL HRMLAKPGSL  240
ERVLNTVKNI EPEIVTVVEQ EANHNGPVFF ERFTEAMHYY SSLFDSMEGS VNEDGTLSEV  300
YLGRQICNVV ACEGEDRVER HETLAQWRVR MGSAGFEPIR LGSNAFRQAR MLLALFAGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-60	38	356	25	348	Protein SCARECROW
5b3h_D	3e-60	38	356	25	348	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269\|PubMed:15347801}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025668014.1	0.0	DELLA protein GAI
Swissprot	Q7Y1B6	1e-177	GAI_SOLLC; DELLA protein GAI
TrEMBL	A0A444YCL9	0.0	A0A444YCL9_ARAHY; Uncharacterized protein
STRING	XP_007163387.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-160	RGA-like 1

Publications ? help Back to Top
Nir I, et al. The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure. Plant Cell, 2017. 29(12): p. 3186-3197 [PMID:29150547]