PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Ahy009687 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YA | ||||||||||||
Protein Properties | Length: 339aa MW: 36806.2 Da PI: 6.8841 | ||||||||||||
Description | NF-YA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.3 | 1.1e-32 | 172 | 228 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rR+Rg+gGrF Ahy009687 172 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRARGTGGRF 228 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.5E-36 | 170 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.727 | 171 | 231 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.2E-28 | 173 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.8E-24 | 174 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 176 | 196 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.8E-24 | 205 | 228 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MQSKSETANR LRSDPHSFQP SGVCSEPWWH GGGYSAIPQA MPGANASNSS SLECPNGESE 60 SNEEGQSLSN SGMNEEDDDA AKDSQPADPN QSGNYGQENQ GMQHSAPSMR EEGLAQAPQL 120 ELVGHSIACA TNPYQDPYYG GMMAAYGPQQ LGFAPFIGMP HARMPLPLEM AQEPVYVNAK 180 QYQGILRRRQ ARAKAELEKK LIKSRKPYLH ESRHQHAMRR ARGTGGRFAK KSEVEGSNKG 240 KEKDGSGPVL SSQSISSSGS EPLPCDSNQT WNSPNVQLNA RGSKVHDKYE NGSGSYHSHN 300 GLQSYHLHSG DRVDEGDCSG QQRGSITNEH ASARRLAIQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-19 | 172 | 228 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015972671.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_015972734.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_025690366.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Refseq | XP_025690375.1 | 0.0 | nuclear transcription factor Y subunit A-1 | ||||
Swissprot | Q9LXV5 | 4e-90 | NFYA1_ARATH; Nuclear transcription factor Y subunit A-1 | ||||
TrEMBL | A0A445EW81 | 0.0 | A0A445EW81_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA18G07890.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 2e-85 | nuclear factor Y, subunit A1 |
Publications ? help Back to Top | |||
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