PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Ahy008393

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 895aa MW: 102268 Da PI: 7.6309

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59555980	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.3e-27	89	191	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +e++ +r+ ++t+Cka+++vk+++dgkw+++++++eHnHe Ahy008393 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqskpdSENSTGRRSCSKTDCKASMHVKRKHDGKWVIHSFVKEHNHE 188 5******************************************99999999987777777999******************************* PP FAR1 89 lap 91 l p Ahy008393 189 LLP 191 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.4E-25	89	191	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.1E-25	288	380	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.681	568	604	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-5	575	602	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-6	579	606	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence Send to blast
MDIDLRLPSG EHDKEDEETA TIDNILDGEE KLNNGAMEGR NMVDPGMELQ ALNGGDLNSP 60 TLDMVIFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYDKSFNRPR ARQSKPDSEN STGRRSCSKT DCKASMHVKR KHDGKWVIHS 180 FVKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKTVVGLK NEKNPFDKGR NLSLESGDAK 240 LMLDFFVQMQ NMNSNFFYAV DLDDDQRLKN ILWIDAKSRH DYTNFCDVVS FDTTYVRNKY 300 KMPLALFVGV NQHYQFILLG CALISDESPT TFSWLMRMWL KGVGGQVPKV MITEHDKTLK 360 SVIADIFPSA CHCVSLWHIV GKISENMAHV IKKHEKFLAK FEKCIYRSLT SDDFEKRWWK 420 IVDRFELRED ECMQSLYEDR KLWAPTFMRD VFLGGMSTVQ RSESVNYYFD KYVHKKTSVQ 480 DFVKLYEAIL QDRYEEEAKA DSDTWNKVAT LKTPSPLEKS VAGVYTHAVF KKIQAEVVGA 540 VACHPKADRQ DETTIIHRVH DMQSNKDFFV VVNQVKSEWS CICRLFEYRG YLCRHILIVL 600 QYSGHSAIPS HYILKRWTKD AKVRNIMGEE SEHMLARVQR YNDLCQRAFK LSEEGSLSQE 660 SYSIAVHALH EAQKSCVSVN NSGKSPMEVG TSVTHAQLST EEDTQSRNMG KSNKKKNPAK 720 KKKVNAEAEV LTVGAIDNMQ QMDKFSTRAA VTLDGYYGTQ QQVQGMLNLM GPRDDFYGNQ 780 QTLQGLGPIS SIPTSHDGYY SAHQGMPNLA QLDFLRTGFT YGIRDDPNVR AAQLHEXSVE 840 ACMNADILLD VVELTKNKNM KAGKQGLLDA YLGVDNGIHH SRFKLKWGIS KSSIL

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence Send to blast

MDIDLRLPSG EHDKEDEETA TIDNILDGEE KLNNGAMEGR NMVDPGMELQ ALNGGDLNSP  60
TLDMVIFKED TNLEPLSGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYDKSFNRPR ARQSKPDSEN STGRRSCSKT DCKASMHVKR KHDGKWVIHS  180
FVKEHNHELL PAQAVSEQTR RMYAAMARQF AEYKTVVGLK NEKNPFDKGR NLSLESGDAK  240
LMLDFFVQMQ NMNSNFFYAV DLDDDQRLKN ILWIDAKSRH DYTNFCDVVS FDTTYVRNKY  300
KMPLALFVGV NQHYQFILLG CALISDESPT TFSWLMRMWL KGVGGQVPKV MITEHDKTLK  360
SVIADIFPSA CHCVSLWHIV GKISENMAHV IKKHEKFLAK FEKCIYRSLT SDDFEKRWWK  420
IVDRFELRED ECMQSLYEDR KLWAPTFMRD VFLGGMSTVQ RSESVNYYFD KYVHKKTSVQ  480
DFVKLYEAIL QDRYEEEAKA DSDTWNKVAT LKTPSPLEKS VAGVYTHAVF KKIQAEVVGA  540
VACHPKADRQ DETTIIHRVH DMQSNKDFFV VVNQVKSEWS CICRLFEYRG YLCRHILIVL  600
QYSGHSAIPS HYILKRWTKD AKVRNIMGEE SEHMLARVQR YNDLCQRAFK LSEEGSLSQE  660
SYSIAVHALH EAQKSCVSVN NSGKSPMEVG TSVTHAQLST EEDTQSRNMG KSNKKKNPAK  720
KKKVNAEAEV LTVGAIDNMQ QMDKFSTRAA VTLDGYYGTQ QQVQGMLNLM GPRDDFYGNQ  780
QTLQGLGPIS SIPTSHDGYY SAHQGMPNLA QLDFLRTGFT YGIRDDPNVR AAQLHEXSVE  840
ACMNADILLD VVELTKNKNM KAGKQGLLDA YLGVDNGIHH SRFKLKWGIS KSSIL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020969175.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_025680441.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A444XA24	0.0	A0A444XA24_ARAHY; Uncharacterized protein
STRING	XP_007148758.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]