PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ahy007718

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

ARF

Protein Properties

Length: 235aa MW: 25990.2 Da PI: 6.9944

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S59521513	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.6	1.8e-16	59	160	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f k+lt+sd+++ g +++p+ +ae++ ++ + ++ +d +g+ W++++iyr+ s++ + k+Fv +++L +gD++vF + +++ l+ Ahy007718 59 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NIVAKDVHGNCWKFRHIYRRDSSQAPIDHWMKHFVIQKKLVAGDSIVFL--RAKDGDLC 154 89***************************97656666..6*******************99999*****************..3488999 PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ Ahy007718 155 VGIRRA 160 ***997 PP
2	Auxin_resp	65.3	2.1e-22	184	234	7	57
Auxin_resp 7 tksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsser 57 ++ +FevvY+Pr s++eF+vk++ v++a+kv+++ GmRfkm feteds ++ Ahy007718 184 NGRPFEVVYYPRGSSPEFCVKASVVRDAMKVRWCFGMRFKMPFETEDSFRI 234 789********************************************9775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.5E-29	53	161	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.1E-23	54	160	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.39E-14	58	159	No hit	No description
SMART	SM01019	5.0E-13	59	161	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.684	59	161	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-15	59	160	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.8E-17	184	233	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
XKYMADSDTD EVFVKLFLTP LTQENTNALL MDLEDGGDDC GNNNGGVVEG GHQEKPASFA 60 KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQNIV AKDVHGNCWK FRHIYRRDSS 120 QAPIDHWMKH FVIQKKLVAG DSIVFLRAKD GDLCVGIRRA KKVAVGGGEV SVSSVVEAVS 180 CGVNGRPFEV VYYPRGSSPE FCVKASVVRD AMKVRWCFGM RFKMPFETED SFRIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	3e-40	5	231	117	338	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269\|PubMed:12036261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015967905.1	1e-142	auxin response factor 18
Refseq	XP_020999314.1	1e-142	auxin response factor 18
Swissprot	Q93YR9	3e-85	ARFP_ARATH; Auxin response factor 16
TrEMBL	A0A444XBI8	1e-138	A0A444XBI8_ARAHY; Auxin response factor
STRING	GLYMA10G35481.1	1e-101	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	8e-68	auxin response factor 16

Publications ? help Back to Top
Yang ZB, et al. TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis. Plant Cell, 2014. 26(7): p. 2889-904 [PMID:25052716] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Zhang GZ, et al. Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana. Plant Mol. Biol., 2016. 90(1-2): p. 77-93 [PMID:26496910] Ye Y, et al. Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination. Plant J., 2016. 85(1): p. 3-15 [PMID:26611158] Liu Z, et al. Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana. Plant J., 2016. 87(4): p. 391-402 [PMID:27189514] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787] Wójcik AM,Nodine MD,Gaj MD miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis. Front Plant Sci, 2017. 8: p. 2024 [PMID:29321785] Lin JS, et al. MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis. Front Plant Sci, 2018. 9: p. 68 [PMID:29449855]