PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Publication

Basic Information? help Back to Top

TF ID

Ahy002619

Organism

Arachis hypogaea

Taxonomic ID

3818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 174aa MW: 19576.1 Da PI: 5.1969

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Ahy#S54175136	PU_ref	Unigene	View CDS
PUT-171a-Arachis_hypogaea-8700	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.5	8.5e-42	1	98	3	100
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 a+Ck+lrr+C+k+C++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA ar+rdPvyG+vg i+ lq+q+ ql+ +la++++e Ahy002619 1 ASCKLLRRRCTKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPIDQRGDAVSSLVYEATARVRDPVYGCVGAISYLQNQVTQLQMQLAVAQAE 98 78********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.6E-41	1	96	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	25.076	1	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
ASCKLLRRRC TKECIFAPYF PSDDPRKFAI VHKVFGASNV SKMLQELPID QRGDAVSSLV 60 YEATARVRDP VYGCVGAISY LQNQVTQLQM QLAVAQAEIL SIHQMQQDPS NNNTTLLPSQ 120 LLDQDYSEKF LLLSSAENNN NYDFLPQYLS FASSSSSSSN VFQDFEPLKR ESFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	1	100	13	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	1	100	13	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015950199.1	1e-124	LOB domain-containing protein 12-like
Refseq	XP_025626482.1	1e-124	LOB domain-containing protein 12
Refseq	XP_025691975.1	1e-124	LOB domain-containing protein 12
Swissprot	Q8LBW3	6e-65	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A445EVT3	1e-123	A0A445EVT3_ARAHY; Uncharacterized protein
STRING	GLYMA11G29450.1	1e-81	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-66	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]