PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Ahy002194 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YA | ||||||||||||
Protein Properties | Length: 206aa MW: 22746.9 Da PI: 6.6295 | ||||||||||||
Description | NF-YA family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.6 | 1.6e-31 | 111 | 167 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +++rkpylheSRh hAl+R+Rg+gGrF Ahy002194 111 EEPVFVNAKQYHGILRRRQSRAKAESEHKA-IRNRKPYLHESRHLHALKRARGCGGRF 167 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.5E-35 | 109 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.959 | 110 | 170 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.0E-27 | 112 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.2E-23 | 113 | 135 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 115 | 135 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.2E-23 | 144 | 167 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MTSANDITDN EADGKQQSES EMQSSSANGT SDPDTGSQNV QFEKPAQLGD VLAMAPPGYP 60 YPDPYYRSIF APYDTQAYAP QPYGYGGQPM VHFQLMGIQQ AGVPLPSDAF EEPVFVNAKQ 120 YHGILRRRQS RAKAESEHKA IRNRKPYLHE SRHLHALKRA RGCGGRFLNA KENENGHNDA 180 ASTDKSQCNI NPNSDKSDIT SSDRTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-21 | 110 | 177 | 1 | 68 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016189889.1 | 1e-154 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_016189890.1 | 1e-154 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_025638053.1 | 1e-154 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Refseq | XP_029147541.1 | 1e-154 | nuclear transcription factor Y subunit A-7 isoform X1 | ||||
Swissprot | Q84JP1 | 3e-61 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A444ZXH9 | 1e-129 | A0A444ZXH9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G29970.1 | 4e-97 | (Glycine max) | ||||
STRING | XP_007159545.1 | 4e-97 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 5e-54 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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