PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco031844.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 118aa MW: 12673.2 Da PI: 8.2685

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco031844.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Aco031844.1 23 FSCNYCQRKFHSSQALGGHQNAH 45 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.6E-6	21	50	No hit	No description
PROSITE profile	PS50157	11.136	23	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MDLNLDLGLE PEPAVRAEPA RLFSCNYCQR KFHSSQALGG HQNAHKLERS LAKRSQALAV 60 SGSSRPGTGA GRFGSAGFDS DRRGWAWVGR MHGFVGHVDV AVDKGELADE IDLSLRL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081777.1	3e-81	zinc finger protein 2-like
Swissprot	Q39261	8e-21	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A199UY56	6e-80	A0A199UY56_ANACO; Zinc finger protein 2
STRING	XP_008805413.1	2e-27	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	3e-23	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Aco031844.1