PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco031450.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 397aa    MW: 42219.9 Da    PI: 6.5636
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco031450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.51.9e-88323961311
         GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdgd.....................pmqRlaayfteALaarlar.svselykalppsetseknss 75 
                  l++lL +cA  v++g+le+a+a+Lar+  l + ++ +                      ++Rla+ ft ALa+rl+r   ++ y+al + ++s ++  
  Aco031450.1  32 LINLLRQCAFDVDAGSLERADACLARIAGLlS-SSSSssassasptgggggggggqatRVHRLATIFTDALARRLLRrPLPGAYEALLAPAAS-SDPL 127
                  5789***********************99853.3332257899999**********9999****************999*******9777666.4677 PP

         GRAS  76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAee 171
                   ++aa++ f++++P+lk+++lt NqaIle +ege+ vHi+D+   +  ++QW+aLl+aL +Rpegpp+lRiT+v++    + ++l++t   L+k A++
  Aco031450.1 128 LVAAARRHFFDLCPFLKLAFLTSNQAILEQMEGERVVHIVDLAgpAADPAQWLALLRALRARPEGPPHLRITAVHD----DPDALHRTSALLSKEADA 221
                  7779999***********************************755899****************************....****************** PP

         GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll....................................desvsleserdevLklvks 233
                   +++f+f++ v +rl++l++++Lrvk+gEalaV++vlqlh+ll                                      + +++ +++++L+ +  
  Aco031450.1 222 HDMSFQFHP-VLSRLDALDFDSLRVKTGEALAVSSVLQLHSLLppaadsnstaplalrhahhlspgsfgellerelslaPTPPHSPRRIESFLSGLLA 318
                  *********.7******************************************************************98444445556777******* PP

         GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                  l Pk+vvv+eqea+hn++ F erf+eal+yy+a+fd+le+++pr + e   vEr llg++i+n+vacegaerrerhe+
  Aco031450.1 319 LAPKIVVVTEQEANHNGAAFCERFSEALYYYAAMFDCLETTAPRSAAEWGRVERLLLGEQIRNIVACEGAERRERHER 396
                  ****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.2836397IPR005202Transcription factor GRAS
PfamPF035146.6E-8632396IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
AAAAAASSPT PFLGYGGSPW AAAASGDRGV ELINLLRQCA FDVDAGSLER ADACLARIAG  60
LLSSSSSSSA SSASPTGGGG GGGGGQATRV HRLATIFTDA LARRLLRRPL PGAYEALLAP  120
AASSDPLLVA AARRHFFDLC PFLKLAFLTS NQAILEQMEG ERVVHIVDLA GPAADPAQWL  180
ALLRALRARP EGPPHLRITA VHDDPDALHR TSALLSKEAD AHDMSFQFHP VLSRLDALDF  240
DSLRVKTGEA LAVSSVLQLH SLLPPAADSN STAPLALRHA HHLSPGSFGE LLERELSLAP  300
TPPHSPRRIE SFLSGLLALA PKIVVVTEQE ANHNGAAFCE RFSEALYYYA AMFDCLETTA  360
PRSAAEWGRV ERLLLGEQIR NIVACEGAER RERHERL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-363839024310Protein SCARECROW
5b3h_D5e-363839024310Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081816.10.0scarecrow-like protein 3, partial
TrEMBLA0A199W6G50.0A0A199W6G5_ANACO; Scarecrow-like protein 3
STRINGGSMUA_Achr8P09690_0011e-116(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-84scarecrow-like 3