PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB

Protein Properties

Length: 309aa MW: 34914 Da PI: 6.1255

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco030627.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	28	75	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Aco030627.1 28 KGSWTQDEDARLIAYIQKHGHGNWRALPKKAGLLRCGKSCRLRWINYL 75 799***************************99**********97 PP
2	Myb_DNA-binding	54.2	3.4e-17	81	125	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE+e+l++++ +lG++ W++Ia+ ++ gRt++++k+ w+++ Aco030627.1 81 RGNFTKEEEEKLIKLHDLLGNR-WSKIASFLP-GRTDNEIKNIWNTH 125 89******************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-24	19	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.548	23	75	IPR017930	Myb domain
SuperFamily	SSF46689	6.36E-31	25	122	IPR009057	Homeodomain-like
SMART	SM00717	6.1E-14	27	77	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-16	28	75	IPR001005	SANT/Myb domain
CDD	cd00167	3.81E-10	30	75	No hit	No description
PROSITE profile	PS51294	27.723	76	130	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-27	79	130	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-16	80	128	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-15	81	125	IPR001005	SANT/Myb domain
CDD	cd00167	2.39E-11	83	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
REWASHYKYG WVMGRGRAPC CEKVGLNKGS WTQDEDARLI AYIQKHGHGN WRALPKKAGL 60 LRCGKSCRLR WINYLRPDIK RGNFTKEEEE KLIKLHDLLG NRWSKIASFL PGRTDNEIKN 120 IWNTHIKKKI ASKEASILSS SSTPRSRGLQ SEANRESESE HADRSLDTSS YSFDKLDARV 180 EPSINMSDMS RSSSSSSLAT NNHTGREEEA DATEGNSLAI PDVLIDPELI WSIMEDYDTK 240 MQSAQVGAEG KRFGKEGERS REWLEDIERE LMCDGPSCET EGDPISSYFQ MEPSSPSPLN 300 LHEVDMMP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-27	26	130	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269\|PubMed:7920701}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081120.1	0.0	myb-related protein Zm1-like
Swissprot	P20024	1e-78	MYB1_MAIZE; Myb-related protein Zm1
TrEMBL	A0A199UK31	0.0	A0A199UK31_ANACO; Myb-related protein Zm1
STRING	XP_008776690.1	2e-93	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2154	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	1e-61	myb domain protein 58

Link Out ? help Back to Top
Phytozome	Aco030627.1

Publications ? help Back to Top
Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701]