PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HSF

Protein Properties

Length: 310aa MW: 33573.6 Da PI: 8.7205

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco030273.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.5	1.4e-35	27	119	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y+++ed e++++isw e+g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv ++ weF++++F++g++ ll++i+ Aco030273.1 27 FLIKTYQMVEDGETDDVISWGEKGRSFVVWKPVEFARDILPVHFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGERILLTEIR 114 9***************************************************************99.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ Aco030273.1 115 RRKSA 119 985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.7E-37	19	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-55	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	8.43E-34	24	116	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	8.0E-19	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.0E-30	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.0E-19	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	8.0E-19	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MANKDGGDGS DHGGGSKGRT NGGTAPFLIK TYQMVEDGET DDVISWGEKG RSFVVWKPVE 60 FARDILPVHF KHNNFSSFVR QLNTYGFRKV VPDRWEFANE NFRRGERILL TEIRRRKSAP 120 TARPPRAGKS NGGGSGGVPP PPPSSITNSA DGLSSSSASS AAARSPPTQN LLELANEYET 180 LKKDNEILTA ELARAKGHCE ELLGFLSKFL DVNKLDLALL MQEDATKTLE EVERVNNVGE 240 ESVTNSGGCV KLFGAHLKDF EGEDRKKGDG RKRGRYDEGD GCGIGKRPLK CHALWWAVGC 300 GVGRGGARP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-22	6	116	10	129	Heat shock factor protein 1
5d5v_B	7e-22	6	116	10	129	Heat shock factor protein 1
5d5v_D	7e-22	6	116	10	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366231	1e-76	AK366231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2041F03.
GenBank	HM446033	1e-76	HM446033.1 Hordeum vulgare subsp. vulgare heat shock factor B1 (HsfB1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081098.1	0.0	heat stress transcription factor B-1-like
Swissprot	Q67TP9	3e-79	HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBL	A0A199UMM8	0.0	A0A199UMM8_ANACO; Heat stress transcription factor B-1
STRING	GSMUA_Achr10P30120_001	4e-93	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36990.1	2e-50	heat shock factor 4

Link Out ? help Back to Top
Phytozome	Aco030273.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Grand X, et al. Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns. Plant Biotechnol. J., 2012. 10(7): p. 840-50 [PMID:22607456]