PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco029320.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HD-ZIP

Protein Properties

Length: 167aa MW: 19180 Da PI: 9.4877

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco029320.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	5.8e-20	38	92	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+ql Le+ F ++++++ ++++eLA+kl+L+ rqV vWFqN+Ra+ k Aco029320.1 38 RKKLRLTKDQLALLESSFVQHNTLNSSMKQELAHKLNLSPRQVEVWFQNKRARSK 92 788899***********************************************98 PP
2	HD-ZIP_I/II	107.9	7.2e-35	38	125	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+k+q++lLE+sF ++++L+++ K+ela++L+l+prqv+vWFqn+RAR k+kq E++ye+Lk+++++l+een++L+++ eeLr Aco029320.1 38 RKKLRLTKDQLALLESSFVQHNTLNSSMKQELAHKLNLSPRQVEVWFQNKRARSKLKQNEVNYEMLKKCCERLSEENQKLKEKLEELR 125 69************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-20	19	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.3E-19	26	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.006	34	94	IPR001356	Homeobox domain
SMART	SM00389	8.8E-19	36	98	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-17	38	92	IPR001356	Homeobox domain
CDD	cd00086	3.84E-16	38	95	No hit	No description
PROSITE pattern	PS00027	0	69	92	IPR017970	Homeobox, conserved site
SMART	SM00340	3.3E-10	94	137	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MINESVGNEN YASLCKSRSR SINNGVESGG EDGKGCTRKK LRLTKDQLAL LESSFVQHNT 60 LNSSMKQELA HKLNLSPRQV EVWFQNKRAR SKLKQNEVNY EMLKKCCERL SEENQKLKEK 120 LEELRLMRLK LPFYVQQYQN EHTLIMCPSC KLKGEDDALA SVKISQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	42	TRKKLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081077.1	1e-118	homeobox-leucine zipper protein HAT14-like
Swissprot	P46665	1e-43	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A199VWQ2	1e-105	A0A199VWQ2_ANACO; Homeobox-leucine zipper protein HAT14
STRING	XP_002530591.1	5e-43	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-36	homeobox from Arabidopsis thaliana

Link Out ? help Back to Top
Phytozome	Aco029320.1