PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco028201.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 613aa MW: 69380 Da PI: 9.8342

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco028201.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91	1.6e-28	57	146	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF+ r+s+ +skr+++i++r++vCs+eg+r++++ + + +++r+r+ tr+gC+a+++vkk+++gkw +tk+e+ HnH l Aco028201.1 57 EFYNAYATQMGFKARISSFIRSKRDKTIISRQLVCSREGFRSTKDASiEGRTKRPRMITRVGCRAMIMVKKQSSGKWIITKCEKIHNHVL 146 6****************************************99997889999********************************87 PP
2	FAR1	97.4	1.6e-30	210	298	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF+ r+s+ ++skr+++i++r vCskeg+r++++++ e+ +r+ra tr+gCka+++vkk+++gkw+v+kl+++HnH+l Aco028201.1 210 FYKEYARRVGFRARVSSYYRSKRDNSIISRLIVCSKEGFRAKKDENGEELQRPRAITRVGCKAMIMVKKRDSGKWVVSKLVKHHNHQLK 298 9*******************************************9**************************************95 PP
3	FAR1	90.3	2.6e-28	348	436	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +Y+++vGF++r+s+ ++skr+++i++r fvCskeg+ ++++ + k +r+r+ tr+gCka+l+vkk+++gkw v+k+e++HnH+l Aco028201.1 348 FYFAYSRRVGFNMRVSTYYRSKRDRSIISRLFVCSKEGFYTKKDAGsEGKIKRPREATRVGCKAMLMVKKTTSGKWFVSKFEKDHNHPL 436 9************************************99988774678899********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-26	57	146	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.1E-27	210	297	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	3.2E-26	348	436	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MERFMFSTPM IISPVDVEPQ IGDVDELIET SVNRELFEPI VEPYEGMEFD SEEAAKEFYN 60 AYATQMGFKA RISSFIRSKR DKTIISRQLV CSREGFRSTK DASIEGRTKR PRMITRVGCR 120 AMIMVKKQSS GKWIITKCEK IHNHVLGTQG KVEMLGYDPY SCEEERNGKD KLGGAVGNAQ 180 EMLSVLPEGE PGLEPHEGME FESEQEAQLF YKEYARRVGF RARVSSYYRS KRDNSIISRL 240 IVCSKEGFRA KKDENGEELQ RPRAITRVGC KAMIMVKKRD SGKWVVSKLV KHHNHQLKLP 300 ASSDDDHSNA EDDDMIGIEK VLGAQDGTGF IEPYEGLEFE SEEASKIFYF AYSRRVGFNM 360 RVSTYYRSKR DRSIISRLFV CSKEGFYTKK DAGSEGKIKR PREATRVGCK AMLMVKKTTS 420 GKWFVSKFEK DHNHPLGSLR KARKLQKHLS NDSKSASQIE LHHSSQESLT SRYNKLCQEA 480 MKYAEAGAAS PDVYNVAMCA LKEAVKKVTA IKKNNGASKL GLVSSGGNEN IQQLEYSFPF 540 SQRSRKRKTS PSSQSQLSRK KLPRKLRICN TCKNAAEHTS RNCPKKQLNI VSSGAVHAFS 600 HEPSDELIQQ DN*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MERFMFSTPM IISPVDVEPQ IGDVDELIET SVNRELFEPI VEPYEGMEFD SEEAAKEFYN  60
AYATQMGFKA RISSFIRSKR DKTIISRQLV CSREGFRSTK DASIEGRTKR PRMITRVGCR  120
AMIMVKKQSS GKWIITKCEK IHNHVLGTQG KVEMLGYDPY SCEEERNGKD KLGGAVGNAQ  180
EMLSVLPEGE PGLEPHEGME FESEQEAQLF YKEYARRVGF RARVSSYYRS KRDNSIISRL  240
IVCSKEGFRA KKDENGEELQ RPRAITRVGC KAMIMVKKRD SGKWVVSKLV KHHNHQLKLP  300
ASSDDDHSNA EDDDMIGIEK VLGAQDGTGF IEPYEGLEFE SEEASKIFYF AYSRRVGFNM  360
RVSTYYRSKR DRSIISRLFV CSKEGFYTKK DAGSEGKIKR PREATRVGCK AMLMVKKTTS  420
GKWFVSKFEK DHNHPLGSLR KARKLQKHLS NDSKSASQIE LHHSSQESLT SRYNKLCQEA  480
MKYAEAGAAS PDVYNVAMCA LKEAVKKVTA IKKNNGASKL GLVSSGGNEN IQQLEYSFPF  540
SQRSRKRKTS PSSQSQLSRK KLPRKLRICN TCKNAAEHTS RNCPKKQLNI VSSGAVHAFS  600
HEPSDELIQQ DN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	543	548	SRKRKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020085401.1	0.0	uncharacterized protein LOC109708182 isoform X1
Refseq	XP_020085402.1	0.0	uncharacterized protein LOC109708182 isoform X1
Refseq	XP_020085404.1	0.0	uncharacterized protein LOC109708182 isoform X1
TrEMBL	A0A199VK35	0.0	A0A199VK35_ANACO; Protein FAR1-RELATED SEQUENCE 12
STRING	GSMUA_Achr2P10090_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	5e-44	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Aco028201.1