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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Aco027950.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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| Family |
WRKY |
| Protein Properties |
Length: 558aa MW: 60824.9 Da PI: 7.6327 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco027950.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 106.6 | 1.2e-33 | 209 | 267 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k
Aco027950.1 209 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLVDGRITEIVYKGTHNHPK 267
8********************************************************85 PP
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| 2 | WRKY | 105.4 | 3e-33 | 380 | 438 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
Aco027950.1 380 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDLRAVITTYEGKHNHD 438
59********************************************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 558 aa
Download sequence Send
to blast |
MGSSTGSLEH TTNTPLSPFS FTTPFATSFS ELLAGVGDED RSKSPTSRAG GGGGGFGSGV 60
PKFKSTPPPS LPLSPPPISP SSYFAIPAGL SPAELLDSPV LLSSHNMMFP SPTTGTFPAQ 120
AFNWRPNNSN NSQPGVFKDE NRAYSDFSFH TNTKPQISNT SMFQPLPTTN SKEEFAPRNS 180
NTKDDIAVAA AAAPEIPVPN ILREPRKSDD GYNWRKYGQK QVKGSENPRS YYKCTYPNCP 240
TKKKVERSLV DGRITEIVYK GTHNHPKPQN TRRSSASSAS SAPPQALQSS APINSEASDS 300
FGGAMDSVAT PENSSISFGD DEIDASAPRS NLEGEEIDED EPDAKRWKKE GENEGASAAG 360
NRTVREPRVV VQTTSDIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTTTG CPVRKHVERA 420
SHDLRAVITT YEGKHNHDVP AARGSRPLAD NNNNNNNNNN VMAIRPSAIN GPSHLFHGRL 480
NAPANQAPFT LEMLQAPAGN YGFPNYNASS MNSSSYMNQL QQQQQQQQQQ QQRQVESMLQ 540
KTKEEPRDDL FFDSLLC*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM667217 | 0.0 | KM667217.1 Ananas bracteatus clone 52609c microsatellite sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Zhang ZL, et al.
A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
Plant Mol. Biol., 2009. 70(1-2): p. 139-51
[PMID:19199048] - Basu S,Roychoudhury A
Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
Biomed Res Int, 2014. 2014: p. 706890
[PMID:25110688] - Zhang L, et al.
Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
Plant Sci., 2015. 236: p. 214-22
[PMID:26025535]
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