PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco027629.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

M-type_MADS

Protein Properties

Length: 1523aa MW: 166541 Da PI: 4.5399

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco027629.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.1	4e-17	177	215	3	41
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i n+s r tf kRr+g++KKA+EL +LCd++ +v++++ Aco027629.1 177 IANDSTRRATFKKRRKGLMKKASELATLCDVRTCVVVYG 215 89***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.082	167	215	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-19	167	226	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.56E-31	168	251	No hit	No description
PRINTS	PR00404	3.2E-7	169	189	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-22	169	260	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.1E-17	177	215	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-7	189	204	IPR002100	Transcription factor, MADS-box
Pfam	PF04825	8.6E-19	430	489	IPR006910	Rad21/Rec8-like protein, N-terminal
SuperFamily	SSF46785	1.33E-13	1446	1518	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.580	4.0E-20	1446	1519	IPR023093	Rad21/Rec8-like protein, C-terminal
Pfam	PF04824	2.1E-17	1467	1516	IPR006909	Rad21/Rec8-like protein, C-terminal, eukaryotic

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000228	Cellular Component	nuclear chromosome
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1523 aa Download sequence Send to blast
FLVPVQGLAD SQTRGCAVLV PVQGSLFRYK AWQPQTQELQ SAVFTSFRLY FAPIDAHTRA 60 YELVSKYPCH VWAYKKRAQH NPPATPLSTR TSSLAFSVSH SLSRSRLTCK TPPHQLPPCV 120 PGPTNLSAPF LGFRFLIFVL LSASCTIAAS VTFGKRQATA EGTYTLMARK KVSLAWIAND 180 STRRATFKKR RKGLMKKASE LATLCDVRTC VVVYGLGEAQ GKVWPSPAEA ARVLARFKSM 240 PEMEQCKKMM NQEGFLRQRV AKAQEQLRKQ ERENRELETT LLMYDGLNSV AEGVGAVGRL 300 RDLAIEDATS LAWMVEMKAK AVQERIDILK AQMHHTASAA ATAAASSSHA AAVIQQHQGP 360 ADALVAKDKT PLEAAMEALQ RQNWFMEVMN PSIDNNVLFG SVSAQAEEMM LMQPYIDTTM 420 PISLDCSRQN SILFPEVPIA LRLSSHLLLG VVRIYSRKVN YLFHDCSEAL LKIKQAFRST 480 AVDLPPEEST APYHSITLPE TFHLDDFELP DAALQGDFVD HHISTKEQIT LQDNLEKTGY 540 STSLFGLDER FGDGNASQIG LDLDEDLFLD KDKSSQHPSI ELGFDDGIFH QGQSSHPSTD 600 MVIDENLRIT ENRSNLSELT YDKSNSSHLE DLRRNNDAST WHGYNIQTPD LNEAFFPNNH 660 EEGPPMEDIR SPDLLECAHA PSTPGLMEET MPANIQGSPV LSPQQGKASS PSVNDDALKA 720 DSLVNSANDN VANPNAVIMD PEQVNNATAT CNEGTDHLND NGETKHSEIT SVDGLSNLET 780 SIAKSMVDAE VVNSPSTVPN NLPESGSMAG TIEKSQPSTN QGHMEEDGTL LPANATEFGS 840 GLSLKSCTAG KDKASFVENV ALVENASEFG NKEPEEGSST VNPLHISEDA CITNATGTTI 900 VGALQNSEHL EPSDLLSNEK SIEQSNSELP EPEKMLEAPS IDVNQTNELG QVTVEKGVTE 960 SDGSANRVSS LTGKKRRLVD STPALENEST GKIARKPRAG KSMDYIPDDD DLLASILVGK 1020 KTPGLRLGPS PPPPKTGPQK RLWLTPRTGM PKRKVLVDDA MVLHADAIRQ QLLNTEDIRH 1080 IRKKAPCTRP DIWMIEKSWF EDEIFHESIF SGASAELNTL QLRTYDIVTR GRSSQAELSK 1140 EPEVSDIVRT SNEDQPCAAP TTEITDQEAN AGSRTDDATN HSEAMLADKA NDIGMSEQQL 1200 SNELNPPSVD QSEMNDKPLH LLENSSPKDI IFTEDDGRGT ISNEGASMSV MDTVNFPQDV 1260 CANLDNNVNG EASLTVESSG FPVADVSLPS DSANVMRDAI SSPNVVVEEA VEEMKDELGN 1320 KLHDENAADE VFDSKENLGE KMLGEDALAD TGLPLQPTIE DENVTSAVGE NSGLQENNLK 1380 GGMDVESTGT NFGPKEYGDF CSGIDGVGTE FLNVDDEGDY DEEANDDLPN PEELHSFENS 1440 GCSSCTRGVA RYLKTLFDEE AGRGRKSVAM DHLLSGKTRE EASRMFFETL VLKTRDYIHV 1500 EQEHPFELIN IKPRINLMKA KF*

Sequence ? help Back to Top

Protein Sequence Length: 1523 aa Download sequence Send to blast

FLVPVQGLAD SQTRGCAVLV PVQGSLFRYK AWQPQTQELQ SAVFTSFRLY FAPIDAHTRA  60
YELVSKYPCH VWAYKKRAQH NPPATPLSTR TSSLAFSVSH SLSRSRLTCK TPPHQLPPCV  120
PGPTNLSAPF LGFRFLIFVL LSASCTIAAS VTFGKRQATA EGTYTLMARK KVSLAWIAND  180
STRRATFKKR RKGLMKKASE LATLCDVRTC VVVYGLGEAQ GKVWPSPAEA ARVLARFKSM  240
PEMEQCKKMM NQEGFLRQRV AKAQEQLRKQ ERENRELETT LLMYDGLNSV AEGVGAVGRL  300
RDLAIEDATS LAWMVEMKAK AVQERIDILK AQMHHTASAA ATAAASSSHA AAVIQQHQGP  360
ADALVAKDKT PLEAAMEALQ RQNWFMEVMN PSIDNNVLFG SVSAQAEEMM LMQPYIDTTM  420
PISLDCSRQN SILFPEVPIA LRLSSHLLLG VVRIYSRKVN YLFHDCSEAL LKIKQAFRST  480
AVDLPPEEST APYHSITLPE TFHLDDFELP DAALQGDFVD HHISTKEQIT LQDNLEKTGY  540
STSLFGLDER FGDGNASQIG LDLDEDLFLD KDKSSQHPSI ELGFDDGIFH QGQSSHPSTD  600
MVIDENLRIT ENRSNLSELT YDKSNSSHLE DLRRNNDAST WHGYNIQTPD LNEAFFPNNH  660
EEGPPMEDIR SPDLLECAHA PSTPGLMEET MPANIQGSPV LSPQQGKASS PSVNDDALKA  720
DSLVNSANDN VANPNAVIMD PEQVNNATAT CNEGTDHLND NGETKHSEIT SVDGLSNLET  780
SIAKSMVDAE VVNSPSTVPN NLPESGSMAG TIEKSQPSTN QGHMEEDGTL LPANATEFGS  840
GLSLKSCTAG KDKASFVENV ALVENASEFG NKEPEEGSST VNPLHISEDA CITNATGTTI  900
VGALQNSEHL EPSDLLSNEK SIEQSNSELP EPEKMLEAPS IDVNQTNELG QVTVEKGVTE  960
SDGSANRVSS LTGKKRRLVD STPALENEST GKIARKPRAG KSMDYIPDDD DLLASILVGK  1020
KTPGLRLGPS PPPPKTGPQK RLWLTPRTGM PKRKVLVDDA MVLHADAIRQ QLLNTEDIRH  1080
IRKKAPCTRP DIWMIEKSWF EDEIFHESIF SGASAELNTL QLRTYDIVTR GRSSQAELSK  1140
EPEVSDIVRT SNEDQPCAAP TTEITDQEAN AGSRTDDATN HSEAMLADKA NDIGMSEQQL  1200
SNELNPPSVD QSEMNDKPLH LLENSSPKDI IFTEDDGRGT ISNEGASMSV MDTVNFPQDV  1260
CANLDNNVNG EASLTVESSG FPVADVSLPS DSANVMRDAI SSPNVVVEEA VEEMKDELGN  1320
KLHDENAADE VFDSKENLGE KMLGEDALAD TGLPLQPTIE DENVTSAVGE NSGLQENNLK  1380
GGMDVESTGT NFGPKEYGDF CSGIDGVGTE FLNVDDEGDY DEEANDDLPN PEELHSFENS  1440
GCSSCTRGVA RYLKTLFDEE AGRGRKSVAM DHLLSGKTRE EASRMFFETL VLKTRDYIHV  1500
EQEHPFELIN IKPRINLMKA KF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	190	RKKVSLAWIANDSTRRATFKKRR
2	187	191	KKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM666697	7e-60	KM666697.1 Ananas bracteatus clone 52056 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020088034.1	0.0	sister chromatid cohesion 1 protein 4 isoform X1
Refseq	XP_020088042.1	0.0	sister chromatid cohesion 1 protein 4 isoform X1
TrEMBL	A0A199V9Z6	0.0	A0A199V9Z6_ANACO; Sister chromatid cohesion 1 protein 4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-33	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Aco027629.1