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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco027001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NAC | ||||||||
Protein Properties | Length: 718aa MW: 81306.8 Da PI: 5.7334 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.5 | 1e-56 | 23 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+ +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v s + Aco027001.1 23 LPPGFRFHPTDEELIIYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKDRKVNS-Q 118 79****************************.99**************95334455777**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+y+grap+g++tdWvmheyrl Aco027001.1 119 KRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 150 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-65 | 18 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.565 | 23 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-29 | 24 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 718 aa Download sequence Send to blast |
PIIRAQVLAV YRGFIDKMAP VSLPPGFRFH PTDEELIIYY LKRKINGRKI ELEIIPEVDL 60 YKCEPWDLPE KSFLPSKDLE WYFFSPRDRK YPNGSRTNRA TRAGYWKATG KDRKVNSQKR 120 AVGMKKTLVY YRGRAPHGSR TDWVMHEYRL DEKECENATG LQDAYALCRV FKKSAPGPKI 180 IEHYGAPYEE HSQWRANDHS PTLDVSSDGR GEDLESCSFS FPVETSSSDM IQGSSVAGNG 240 KWMNFLPEEA LNATGLLCDP FSYSYLPSKK LRSGQTRSYR VYDAAVAHVL CDVQVDVALE 300 CARLQHRLSL PPLEVEDFPP VDLMDSKVGL HTAMLRDHNH NEVDILQEIL SVASASQELI 360 NNSSYTDMWH GNTSHFEDYA SLLELDKRNE ALQFPQIEIA GSTRLIGKQC EEDDSGRLIE 420 ISDLEEEFKE EKKKIENLRG VKMLNNNLPE IILEEEQSSP TESTTNYPLD ASGTEGEAVH 480 LTNSTELGDI DDKPIFSQSQ PDDFTVGFIG INPLGASQEE HHCEAYANAP TFDFYEKVDV 540 KHGLFISRGG VAETHFHQIE PSKKVSFHMN PMARDNVLVE TIEKGRSRVS VFSKFKAFMR 600 DKINGEKISM KPCKRSLGNE TMSGMLQVVS TVILNSCVYL GDVSEQAISM EQAPLKENQM 660 KEEKEGACSN ELKQVKNWKK SDQENNIWFP GVRKRGFVSM LLYGKWAFFT APFALAH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-57 | 16 | 179 | 10 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-57 | 16 | 179 | 10 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-57 | 16 | 179 | 10 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-57 | 16 | 179 | 10 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-57 | 16 | 179 | 13 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-57 | 16 | 179 | 13 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-57 | 16 | 179 | 13 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-57 | 16 | 179 | 13 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-57 | 16 | 179 | 13 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-57 | 16 | 179 | 13 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-57 | 16 | 179 | 13 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-57 | 16 | 179 | 13 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-57 | 16 | 179 | 10 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-57 | 16 | 179 | 10 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020080309.1 | 0.0 | NAC domain-containing protein 86-like | ||||
TrEMBL | A0A199UN23 | 0.0 | A0A199UN23_ANACO; NAC domain-containing protein 86 | ||||
STRING | XP_008778272.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6624 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-112 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Aco027001.1 |