PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026956.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 272aa    MW: 31058.6 Da    PI: 10.3469
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026956.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-1220951898
                 --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                 +p   a+  ++++++  t tl ++ g+ W + l  +  ++ + +++GW+eF +a++  +gDf++F+++g++ f  +vkvf+
  Aco026956.1 20 IPDAIAQLLMHQHNG--TATLFSPLGKFWHIALEKDADDN-THFSNGWREFSRAHDFTAGDFLLFRYEGNMVF--KVKVFD 95
                 565555444555444..89999***********5555554.55899***************************..999998 PP
2B364.51.6e-20179265295
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  + + +++++++ g +++p+kf++++g+   ++ +++led++ rsW vkl  + + +   l +GWkeF   n+L+egD ++F+l+++     +v 
  Aco026956.1 179 E-KIIRPYNFSCGHMSVPRKFCASNGLT--RKEEMVLEDPKRRSWHVKL--WHGVSDSRLLSGWKEFSAVNKLEEGDKCTFQLVSDGIL--RVL 265
                  3.456999*****************998..4559***************..66655656777********************9875544..443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.492397IPR003340B3 DNA binding domain
SMARTSM010196.0E-51297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.0E-171699IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-191799IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-91895IPR003340B3 DNA binding domain
CDDcd100172.50E-132095No hitNo description
Gene3DG3DSA:2.40.330.103.4E-25173268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-23174268IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-20176266No hitNo description
PROSITE profilePS5086314.198177270IPR003340B3 DNA binding domain
SMARTSM010193.7E-16178270IPR003340B3 DNA binding domain
PfamPF023622.2E-18179266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKRAIETTKR AIKAAKRKPI PDAIAQLLMH QHNGTATLFS PLGKFWHIAL EKDADDNTHF  60
SNGWREFSRA HDFTAGDFLL FRYEGNMVFK VKVFDVTGCR KQYDRAISEK RSFGAKDEIL  120
EDVCDGMCNS DDWQNLSTGR RKRGKPTAPK EQLQTPPGFL ATDKSATKNN RAKTVPHFEK  180
IIRPYNFSCG HMSVPRKFCA SNGLTRKEEM VLEDPKRRSW HVKLWHGVSD SRLLSGWKEF  240
SAVNKLEEGD KCTFQLVSDG ILRVLIQKRR A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020103554.10.0putative B3 domain-containing protein Os04g0347400 isoform X1
TrEMBLA0A199UHD80.0A0A199UHD8_ANACO; Putative B3 domain-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-19B3 family protein