PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco026468.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 382aa    MW: 41746.4 Da    PI: 8.5234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco026468.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.2e-07221243123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C+ Cgk F+r  nL+ H+r H
  Aco026468.1 221 HYCQVCGKGFKRDANLRMHMRAH 243
                  68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0034221243IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-7221247IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653221248IPR007087Zinc finger, C2H2
SuperFamilySSF576675.15E-7221243No hitNo description
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SMARTSM0035547277310IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.15E-7310336No hitNo description
SMARTSM0035518315337IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MMNNQQGYQM YQGIEDMLSL STGAAAATTS CAVDAPPSHS LLYNISALRE KIQQLVSYVG  60
TIISPSGMQQ DSVGVVVSGA GSLAQEIIVA ASSIMYALQQ IGLETVPPPT DELLARHAKT  120
SYEDSSEVLD HAVRSNNLDG GQSIVFSDAD VHYSCNPSNT TSDHMVSGNN GDHAVNSNKI  180
HGKLEFSRTA EKKKEPKLGS SSKEYDVIEL NAADLLAKYS HYCQVCGKGF KRDANLRMHM  240
RAHGDEYKTT AALTNPAKTM IAALLGDKEV GSGARKYSCP QEGCRWNKKH PRFTPLKSLV  300
CMKNHYKRSH CPKMYVCKQC EKKQFSLLSD LRTHEKHCGD LRWRCSCGTN FSRKDKLMGH  360
VALFVGHTPI IGSASCSFTK N*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020085498.10.0zinc finger protein STAR3-like
TrEMBLA0A199VQ200.0A0A199VQ20_ANACO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGXP_008812337.11e-126(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-96C2H2 family protein