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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco025749.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | B3 | ||||||||
Protein Properties | Length: 170aa MW: 19698.4 Da PI: 9.7382 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.6 | 3.5e-11 | 41 | 102 | 33 | 98 |
-SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ + l+d+ g +W+vk + g+ ++ GW++F+ ++ +k g+ +vFk +++++f v++f Aco025749.1 41 DQNVYLQDSYGYRWRVKT--CSMNGALAFGHGWRNFALDHAIKFGELLVFKQISKHGF--SVQIFA 102 4579**************..8888899************************8777777..888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.716 | 1 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.10E-10 | 1 | 101 | No hit | No description |
SMART | SM01019 | 0.0014 | 19 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-13 | 33 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-14 | 33 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-8 | 41 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
YVPPMFAKAI GDLADQNVYL QDSYGYRWRV KTCSMNGDLA DQNVYLQDSY GYRWRVKTCS 60 MNGALAFGHG WRNFALDHAI KFGELLVFKQ ISKHGFSVQI FATTARERLH LCERNKRSNK 120 RKRRRKKEPA NNLCLNDIQN NSDASEKRLC ILDKDSPKDE KIIDATNVMD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 124 | KRKRRR |
2 | 120 | 124 | RKRRR |
3 | 120 | 126 | RKRRRKK |
4 | 120 | 127 | RKRRRKKE |
5 | 122 | 127 | RRRKKE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087549.1 | 1e-80 | B3 domain-containing protein Os01g0905400-like isoform X1 | ||||
Refseq | XP_020087558.1 | 1e-80 | B3 domain-containing protein Os01g0905400-like isoform X2 | ||||
Refseq | XP_020087565.1 | 2e-80 | B3 domain-containing protein Os01g0905400-like isoform X3 | ||||
Refseq | XP_020087581.1 | 7e-81 | uncharacterized protein LOC109709646 isoform X5 | ||||
Swissprot | Q5N6V0 | 5e-31 | Y1054_ORYSJ; B3 domain-containing protein Os01g0905400 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11461 | 32 | 40 |
Link Out ? help Back to Top | |
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Phytozome | Aco025749.1 |
Publications ? help Back to Top | |||
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