PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco024208.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 1256aa    MW: 139264 Da    PI: 9.6693
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco024208.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001211391162122
                   EEET..TTTEEESSHHHHHHHHHH CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                   y+C    C+++Fs+k +L +H r 
  Aco024208.1 1139 YTCDieGCSMTFSTKQDLATHKRD 1162
                   99*******************985 PP
2zf-C2H212.10.0006212221248123
                   EEET..TTTEEESSHHHHHHHHHH..T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                   y+C    Cg++F+  s++ rH r+  H
  Aco024208.1 1222 YVCRepGCGQTFRFVSDFSRHKRKtgH 1248
                   899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005582.4E-48195364IPR003347JmjC domain
PROSITE profilePS5118435.678198364IPR003347JmjC domain
SuperFamilySSF511973.84E-26209374No hitNo description
PfamPF023736.4E-38229347IPR003347JmjC domain
Gene3DG3DSA:3.30.160.607.7E-411381161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.111391161IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.53811391161IPR007087Zinc finger, C2H2
SMARTSM003555.811621186IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.65811621191IPR007087Zinc finger, C2H2
PROSITE patternPS00028011641186IPR007087Zinc finger, C2H2
SuperFamilySSF576676.69E-1411731228No hitNo description
Gene3DG3DSA:3.30.160.605.2E-911901215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.5E-411921216IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.07111921221IPR007087Zinc finger, C2H2
PROSITE patternPS00028011941216IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-1012161245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.07412221253IPR007087Zinc finger, C2H2
SMARTSM003550.2512221248IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012241248IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1256 aa     Download sequence    Send to blast
KKKKKKKKKK NVTIRRMLSK LGGARVAEIP AGGAGVPPEP RGVPRPDRVH PEDRGGGLLL  60
RHLQDRPSPP GSSPEDCPRQ LRPLLRRPLP ALRHPHPHLR ARQQQLGLSL PPPPPPPRRS  120
PSAEPRRFTL RQFASKADHF RRSFLAKSPP SPDIDALFWN SAAAGRPFSV DYANDIPGSG  180
FSPLPRRRPH SDPATVADTP WNMRGVSRAP GSLLRFMREE IPGVTSPMIY VAMMFSWFAW  240
HVEDHELHSL NYLHTGAPKT WYGVPRDAAL AFEEAVREHG YAGEVNPLVT FAILGEKTTV  300
MSPEVLVASG IPCCRLVQNA GEFVVTFPGA YHSGFSHGFN CAEAANIATP GWLKVAKEAA  360
IRRASINYPP MVSHYQLLYA LALSLFSRVP FCGGNEPRSC RLRDKMKGEG EEMIKNEFVR  420
SVIQNNNLLS TLLNDGSSCV ILPQNVPDSL LCSNSHARSQ IKIKPRLSQG LNSREEALEA  480
SRLLPSDDFK QGYNMGIRDF GGFCSVKGNS LSVSNGKKIL SATYGKFGSA DLCSSSSDSQ  540
NMECDKEGTC QGDGLLDQGL LSCVTCGILS FSCVAVIQPR EEAAKYLMST DCSFLNNHFN  600
GAGEVGGIDN DRDTWITDDF SGKRDSHVAD RSNTYSVHAS DHSVEVISDI TYQKGASALD  660
LLASVYGDLS DSDDEVLDDS ENQTSAQNSE CTAGSNDLKG QKVAAEDKSQ LKLEFAEGIQ  720
SENSKSTGEK ELAISRSSMK FVEEPIRNSC MEFGGSSDKM GTPNVPHDLC SDSADAAGAA  780
TITREVRCFS AKLKNSTTPA VRSDKDSSRM HVFCLEHAIE VERQLQPVGG VHIMLLCHPD  840
YPKIEAAAKA LAKELEIDHD WKDIHFREAR KEDQQIIRAA LEDEEAIPAN CDWAVKMGIN  900
LYYSANLSKS PLYSKQMPYN AVIYKAFGRN SPNHSPMKLK ASGGRRAGRQ KKIAVAGRWC  960
GKVWMANQVH PFLACRNREA DDAEFVESLC SRKVDRKPEF DPDTDHGGRV APSTRKGNNA  1020
STARKLGRKR KKKPLKKTNT KRPRNSKEGT SRTMDNVAEP AISLCGRVLR SSRTKRPEKL  1080
KQNSLKCKDE LEDGTRPPIK KHPSRSDKNK PVRKQIMKKK TKKNEAPSHI TKGDEGGEYT  1140
CDIEGCSMTF STKQDLATHK RDICPVKGCL KKFFSHKYLV QHRKVHMDDR PLECPWKGCN  1200
RTFKWPWART EHIRVHTGDR PYVCREPGCG QTFRFVSDFS RHKRKTGHSV KKSKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A1e-6112645395413Transcription factor jumonji (Jmj) family protein
6ip4_A1e-6112645395413Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
119KKKKKKKKK
239KKKKKKK
310231032RKLGRKRKKK
410271031RKRKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020095091.10.0LOW QUALITY PROTEIN: lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A199W5D50.0A0A199W5D5_ANACO; Lysine-specific demethylase
STRINGXP_008799926.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-150relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]