PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco024142.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bZIP

Protein Properties

Length: 207aa MW: 23314.3 Da PI: 10.1399

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco024142.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50	6.5e-16	122	175	3	56
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +++r+rr++kNRe+A rsR+RK+a++ eLe v++Le+eN +L ke e k + Aco024142.1 122 AVRRQRRMIKNRESAARSRERKQAYTLELESLVAQLEEENARLLKEKEDFKRLR 175 689******************************************999888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00041	5.9E-6	119	135	IPR001630	cAMP response element binding (CREB) protein
SMART	SM00338	1.0E-13	120	184	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-14	121	173	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.404	122	173	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.98E-11	123	173	No hit	No description
CDD	cd14707	1.27E-19	124	173	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.5E-14	124	173	No hit	No description
PROSITE pattern	PS00036	0	127	142	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	5.9E-6	137	157	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	5.9E-6	157	174	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MASPAVDSDV ARPISPYPLS VEDLPASTSD RSQTLRSMGD LLRSIHGAGG GGVRGGDQDE 60 DEAYGEMTLE DFLARAGAVK KEEEDDARVL PENPVLGFGG EERRRRGRRR KRPVLDPIDN 120 AAVRRQRRMI KNRESAARSR ERKQAYTLEL ESLVAQLEEE NARLLKEKED FKRLRLKEIK 180 ENIIPLTEKK TPARPSPLRR TQSSKW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	112	ERRRRGRRRKRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM662447	6e-99	KM662447.1 Ananas bracteatus clone 46183 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020110098.1	1e-145	G-box-binding factor 4-like
Swissprot	Q0JHF1	3e-41	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A199UNS9	3e-96	A0A199UNS9_ANACO; G-box-binding factor 4
STRING	GSMUA_Achr3P22470_001	3e-47	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-27	bZIP family protein

Link Out ? help Back to Top
Phytozome	Aco024142.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]