PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco023568.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family Trihelix
Protein Properties Length: 446aa    MW: 48577.2 Da    PI: 7.7011
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco023568.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.12.6e-14118200186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Li+a  e+  +l+rg+lk+++W+ev++++ ++ g++++pk   qCk++++ l+k+yk +k   +        ++p+f++l+
  Aco023568.1 118 CWSEGATSTLIDAWGERYLELSRGNLKQKHWQEVADAVtSRDGYTKTPKtdvQCKNRIDTLKKKYKIEKSKPST-------SWPFFSRLD 200
                  7*************************************888899998865559*************98876664.......5****9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-26116200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEDEEDQPRS PSPYSSRSPS PSPSPSPPPI TIVAPSSAAA AAAAAAVQPP PLPPNGRHLS  60
DPVTIAAAAP HPHAHPAHQT LTLALPIQHP RPSPSPSTYH QHQQGPSSGG GGGGREDCWS  120
EGATSTLIDA WGERYLELSR GNLKQKHWQE VADAVTSRDG YTKTPKTDVQ CKNRIDTLKK  180
KYKIEKSKPS TSWPFFSRLD LLLGPNQKTP NPNPNPSANN NNNNNNNNNS NNNNNPSSSS  240
SKIPSGVPIR PPVHPQFPQR HRTPHLYHNP HPAGTKKQPQ LSPPSISSEM SAESSDGFPP  300
ETAANGGKKR RRVEAEADEE EEEEEEEEEE EEDAARTAGL RELTRAILRF GEVYEKVESS  360
KLRQAMELEK QRLAFARELE LQRMQFFMKT QMELSQLTQH HGSGGGGGGT STSTRRRASG  420
AGPSSNHHHH HLHHKNNSSN THNTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308312KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090210.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A199UW410.0A0A199UW41_ANACO; Trihelix transcription factor ASIL2
STRINGXP_008784347.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-34sequence-specific DNA binding transcription factors