PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022643.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 323aa    MW: 33128.3 Da    PI: 9.6261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022643.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-063457225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C  f+ t  C++G++C+F H
  Aco022643.1 34 KSKPCTKFFSTSGCPFGENCHFLH 57
                 7789******************** PP
2zf-CCCH24.74.1e-08103128227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ +     C++G++C++aHg+
  Aco022643.1 103 KTRLCNKYNTAEGCRFGEKCHYAHGE 128
                  8***********************96 PP
3zf-CCCH38.91.5e-12289314127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC +fa+ G C +GdrC+FaHg+
  Aco022643.1 289 FKTKLCENFAK-GSCTFGDRCNFAHGE 314
                  69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.213259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.843260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-63359IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-43457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-83457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1399133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-8100132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0063101128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619101129IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.73E-14180255IPR004088K Homology domain, type 1
SMARTSM003229.9E-10184254IPR004087K Homology domain
PROSITE profilePS5008414.152185249IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.9E-15185253IPR004088K Homology domain, type 1
CDDcd001055.62E-13187249No hitNo description
PfamPF000131.4E-10187251IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.2E-15286319IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-8288314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-9288319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.366288315IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10289314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDGGRKRGRV GAANGGAAKR SREKESFQTG VGSKSKPCTK FFSTSGCPFG ENCHFLHYVP  60
GGYQAVAHML NLPNPANPPP GRIAPPAPAF PDSHSGSAPP AVKTRLCNKY NTAEGCRFGE  120
KCHYAHGERE LGKPIPDAAM QPQMGGGGGG GGGRFSGHPE YPMPPPPAEA YGGMGGGAPG  180
SFGASATAKI SVDASLAGAI IGKGGVNTKQ ICRVTGARLA IRDHESDPNL KNIELEGTFD  240
QIRDASSMVR ELIVSISGPA AASAFAAPAA GRKPGRGGAF SHGGKESSFK TKLCENFAKG  300
SCTFGDRCNF AHGESELRKA TV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020081946.10.0zinc finger CCCH domain-containing protein 14-like isoform X1
RefseqXP_020109382.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-129C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A199UNP60.0A0A199UNP6_ANACO; Zinc finger CCCH domain-containing protein 14
STRINGOPUNC02G06300.11e-134(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.18e-50C3H family protein