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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco022504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | GRAS | ||||||||
Protein Properties | Length: 627aa MW: 69854.8 Da PI: 5.2171 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 414.2 | 1.2e-126 | 241 | 611 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlt 97 +lL++c+ea+ +g++e+++ lLarl e+asp+g+p++R++ayfteA a r+a+ +++++++ +p+e +++ +++ + al+l+++vsPi+kf h+t Aco022504.1 241 LNLLTSCVEAIGAGNHEAVNYLLARLGEQASPKGTPIHRVVAYFTEAVALRVAKLWPHIFSITSPRELTDHLedEENDAIALRLLNHVSPIPKFLHFT 338 689***************************************************************999877556666777888************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 +N+ +l+a+eg+ervHi+Dfdi+qGlQWp+L+q+LasRp++p+++RiTgvg+ ++el +tg rL++fAe+l++pfef++ v++rled++l++L+ Aco022504.1 339 CNERLLRAFEGKERVHIVDFDIKQGLQWPSLFQSLASRPQPPAHVRITGVGE----CRQELLNTGVRLSRFAEALNLPFEFHA-VTDRLEDVRLWMLH 431 ****************************************************....***************************.7************* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgr 292 vk++E++aVn+vl +h+ll +++ ++ ++L l++s++P+vv +eqeadhn+e++ r+ ++++yysa+fdsl+ l+++s +r+k+E++ ++r Aco022504.1 432 VKRDECVAVNCVLVMHKLLYDETGSAL--MDFLGLIRSVKPEVVLTAEQEADHNDERWELRLGKSVQYYSAVFDSLDLCLASDSpAARAKIEQM-FAR 526 ******************966655554..89*****************************************************999*******.*** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaW 373 ei+n+vaceg+er+erhe+++kW +++e+ G++++ ++e++ q +l+lr+++sd y+ve++ s+ l l W d+pL++vSaW Aco022504.1 527 EIRNLVACEGDERFERHERFSKWIKKMEDGGYRSAGIGEREIVQSQLILRMYASDKYSVEKRgegvSEGLSLRWVDQPLYTVSAW 611 *****************************************************999****99888889999************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.583 | 214 | 588 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-124 | 241 | 611 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MLAGWHQYLR SEASLQLQVC QFQLQEKMGT QRLDLPCGFA KRENHPRVSL SLEKPIDPRS 60 TSCSFRQNPL AAPSSSSLVA KIEPTDQGAL WEESSRRLKR FHERDCFEES ILARAKRTRT 120 GEAGQLVGGG GGSGGGDEDI WFPESIERTP FVEEEKVFLV PSAASFPVDN TSLVGSFESE 180 KDFEWPNTKS QSDSSSSSGT GGLSPKPEIE TENRNDVVAY TVGGAGVDES TRIESEGLGL 240 LNLLTSCVEA IGAGNHEAVN YLLARLGEQA SPKGTPIHRV VAYFTEAVAL RVAKLWPHIF 300 SITSPRELTD HLEDEENDAI ALRLLNHVSP IPKFLHFTCN ERLLRAFEGK ERVHIVDFDI 360 KQGLQWPSLF QSLASRPQPP AHVRITGVGE CRQELLNTGV RLSRFAEALN LPFEFHAVTD 420 RLEDVRLWML HVKRDECVAV NCVLVMHKLL YDETGSALMD FLGLIRSVKP EVVLTAEQEA 480 DHNDERWELR LGKSVQYYSA VFDSLDLCLA SDSPAARAKI EQMFAREIRN LVACEGDERF 540 ERHERFSKWI KKMEDGGYRS AGIGEREIVQ SQLILRMYAS DKYSVEKRGE GVSEGLSLRW 600 VDQPLYTVSA WALSEVGGSS STSLPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-67 | 234 | 611 | 13 | 378 | Protein SCARECROW |
5b3h_A | 4e-67 | 234 | 611 | 12 | 377 | Protein SCARECROW |
5b3h_D | 4e-67 | 234 | 611 | 12 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020112577.1 | 0.0 | scarecrow-like protein 28 | ||||
Swissprot | Q9LWU9 | 1e-170 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A199V7P4 | 0.0 | A0A199V7P4_ANACO; Scarecrow-like protein 28 | ||||
STRING | XP_008800814.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-161 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco022504.1 |
Publications ? help Back to Top | |||
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