PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco021772.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HB-other

Protein Properties

Length: 1194aa MW: 135144 Da PI: 8.3341

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco021772.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.7	4.7e-14	45	94	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+eql+ Le+++ +ryp+++++ee A++++Lt +q+++WF rR ke++ Aco021772.1 45 TPEQLQLLEKFYSAERYPNQKAMEEYAASVNLTYNQIRIWFVERRRKERR 94 99**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.95E-14	15	96	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-14	25	94	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-12	35	99	IPR001356	Homeobox domain
CDD	cd00086	3.80E-9	43	85	No hit	No description
Pfam	PF00046	1.9E-11	45	94	IPR001356	Homeobox domain
PROSITE profile	PS50071	14.511	45	95	IPR001356	Homeobox domain
SMART	SM00571	2.0E-7	402	461	IPR018501	DDT domain
PROSITE profile	PS50827	11.044	402	461	IPR018501	DDT domain
Pfam	PF02791	4.2E-7	404	456	IPR018501	DDT domain
Pfam	PF15612	1.1E-7	685	718	IPR028942	WHIM1 domain
Pfam	PF15613	3.3E-10	824	895	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1194 aa Download sequence Send to blast
MVAPLGSWRR SNPSDMSPPP LKSSMTSMGN EVTDAKKDHG AKKKTPEQLQ LLEKFYSAER 60 YPNQKAMEEY AASVNLTYNQ IRIWFVERRR KERRGEEQNI LGMKDCQGGR RVHTYECSSK 120 WSVNGRFLKH MHRVLGGQSA GRKRLMRLQI LFPRDYILRK VFRKDGPPLG AEFDPLPNKE 180 FDYRVDARSL RSCHDNKKTT KKRKIFESPI EETRTPPVEN VPPKKHGIGK GLMTVWHATN 240 ANKGDFPMNL NFLCRSTALG TLSSSAGSKE TLPKDSSPRK PVSKRTAVPK RIEKKRKPPL 300 IKRKVPCGKA VEPQKSHATE CKLSVDECQS SELENELSVL IDDEELELEE LQTGPNPLRC 360 SAHLASSGRH DCPLCKDLLA RFPPQSVKMK QPCSTRPWDS SPELVKKLFK VVQFLYSNSI 420 SIDIHSFTFD EFAQAFHDKD SMLLGKVHVA LLKLLLLDVE REKSGGFIPR PSKDCRFLHF 480 SNFVREQEFD VNFWCQSLNS LTWIEILRQV LVAAGFGSKC SSLQRETFGK ERNQMVKYGL 540 RPRTLKAELF SLLAKKGSSG LKVSELARSS QIIDLDLPNT TEEIEQLICS TLSSDITLFE 600 KIAPSAFRLR VDPHIKGKEY PQSDSDDSGS VDDESLNAST SSSSDSDDSE DMDSFTYERR 660 IHRNGARKKK TCKKLTKYSE IDESNSGEAW VLGLMEGEYA DLSIDEKLEA LVALVDLVGS 720 AGSCLRLEES ARTTSVIPNA QHQRSGGKIK KSQNHHLLSR PTNSAEETNP AQNPFPADSS 780 PTRSKGYQRG RSTCKRTAYT SSDSGRNIEA AEVSGLVVHQ PQSIYLGSDR RYNNYWLFLG 840 PCTTNDPGHR RVYFESSEDG HWEVIDTPQA LLALLSVLDS RGRREARLVA SLEKRQEFLC 900 QAMKNFIQNE NETRRSHASD PSDITTSSGD GSSPVSDIDN IVIPDSINDF STPSGVIVLE 960 LGRKSEEKMQ KWERLQAFDK WIWNSFNSVL SAVKYSRRSY MDLLFRCESC HDLYWRDEKH 1020 CRICHSTFEI DFDLEERYAV HAATCREAED TCEFPKHKVL PCQLQALKAA IYAIEVAMPE 1080 MTLVDSWRKS AHKLWVKRLR RTSSLPELLQ VLTDFVGAIN EDWLYECAST GSNSSVDDII 1140 INFQTMPQTI SAVALWIVKL DTLIAPHLEK AHSDRTAANM QLSKLYVVSL EIVP

Sequence ? help Back to Top

Protein Sequence Length: 1194 aa Download sequence Send to blast

MVAPLGSWRR SNPSDMSPPP LKSSMTSMGN EVTDAKKDHG AKKKTPEQLQ LLEKFYSAER  60
YPNQKAMEEY AASVNLTYNQ IRIWFVERRR KERRGEEQNI LGMKDCQGGR RVHTYECSSK  120
WSVNGRFLKH MHRVLGGQSA GRKRLMRLQI LFPRDYILRK VFRKDGPPLG AEFDPLPNKE  180
FDYRVDARSL RSCHDNKKTT KKRKIFESPI EETRTPPVEN VPPKKHGIGK GLMTVWHATN  240
ANKGDFPMNL NFLCRSTALG TLSSSAGSKE TLPKDSSPRK PVSKRTAVPK RIEKKRKPPL  300
IKRKVPCGKA VEPQKSHATE CKLSVDECQS SELENELSVL IDDEELELEE LQTGPNPLRC  360
SAHLASSGRH DCPLCKDLLA RFPPQSVKMK QPCSTRPWDS SPELVKKLFK VVQFLYSNSI  420
SIDIHSFTFD EFAQAFHDKD SMLLGKVHVA LLKLLLLDVE REKSGGFIPR PSKDCRFLHF  480
SNFVREQEFD VNFWCQSLNS LTWIEILRQV LVAAGFGSKC SSLQRETFGK ERNQMVKYGL  540
RPRTLKAELF SLLAKKGSSG LKVSELARSS QIIDLDLPNT TEEIEQLICS TLSSDITLFE  600
KIAPSAFRLR VDPHIKGKEY PQSDSDDSGS VDDESLNAST SSSSDSDDSE DMDSFTYERR  660
IHRNGARKKK TCKKLTKYSE IDESNSGEAW VLGLMEGEYA DLSIDEKLEA LVALVDLVGS  720
AGSCLRLEES ARTTSVIPNA QHQRSGGKIK KSQNHHLLSR PTNSAEETNP AQNPFPADSS  780
PTRSKGYQRG RSTCKRTAYT SSDSGRNIEA AEVSGLVVHQ PQSIYLGSDR RYNNYWLFLG  840
PCTTNDPGHR RVYFESSEDG HWEVIDTPQA LLALLSVLDS RGRREARLVA SLEKRQEFLC  900
QAMKNFIQNE NETRRSHASD PSDITTSSGD GSSPVSDIDN IVIPDSINDF STPSGVIVLE  960
LGRKSEEKMQ KWERLQAFDK WIWNSFNSVL SAVKYSRRSY MDLLFRCESC HDLYWRDEKH  1020
CRICHSTFEI DFDLEERYAV HAATCREAED TCEFPKHKVL PCQLQALKAA IYAIEVAMPE  1080
MTLVDSWRKS AHKLWVKRLR RTSSLPELLQ VLTDFVGAIN EDWLYECAST GSNSSVDDII  1140
INFQTMPQTI SAVALWIVKL DTLIAPHLEK AHSDRTAANM QLSKLYVVSL EIVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	147	GRKRLMRL
2	288	296	PKRIEKKRK
3	289	296	KRIEKKRK
4	658	674	RRIHRNGARKKKTCKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020111512.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A2H3ZH97	0.0	A0A2H3ZH97_PHODC; homeobox-DDT domain protein RLT3
STRING	XP_008813491.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-158	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Aco021772.1