PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco021629.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 308aa MW: 33693.7 Da PI: 6.2349 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.8e-17 | 55 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +grWvAeI+ ++ r +lg+f taeeAa+a++aa+ l+g Aco021629.1 55 TKFVGVRQRP-SGRWVAEIKG----TtQKIRMWLGTFETAEEAARAYDAAACLLRG 105 699*******.7******766....1346**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.1E-13 | 55 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-32 | 56 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-26 | 56 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-19 | 56 | 113 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.335 | 56 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.06E-16 | 57 | 112 | No hit | No description |
PRINTS | PR00367 | 1.1E-7 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MELQFQLHQN LDQSTYSYDD HVPVVSKTTK SKGRSPLKTK KTTTAAAAAA ATAATKFVGV 60 RQRPSGRWVA EIKGTTQKIR MWLGTFETAE EAARAYDAAA CLLRGANTRT NFLLADCPPP 120 DSALTSRIHA LLRLHQLKKK HAQPNPPPPP PPVSTITTAT TTVSFASIAT ENENVPTQLS 180 DEEVYRPCFL GEFDQPGSTN QPPSDHSCSF VSTDSGFHRL PPAYGGFELD EICASDRSTN 240 TSTEMSEFER IKVERQISAS LYAMNGVQEY YDILHNTYCG GGDEDAALWD LPPLCHLSQN 300 LIRIDTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 7e-41 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020092141.1 | 0.0 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A199VT88 | 0.0 | A0A199VT88_ANACO; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | XP_008804361.1 | 8e-69 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-31 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Aco021629.1 |