PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco021231.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 696aa    MW: 75904.7 Da    PI: 8.0069
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco021231.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08428468848
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      Ede+l+++++ +G g+W++ +r  g+  ++k+c+ rw +yl
      Aco021231.1 428 EDEKLAECIRVHGEGCWRSLPRAAGLLWCGKSCRIRWINYL 468
                      9************************878***********97 PP
2Myb_DNA-binding46.96.2e-15474519148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      r ++ ++E++l+++++++lG++ W++Ia +++ gRt+ ++ks+w+++l
      Aco021231.1 474 RRNFNEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDDEVKSYWNSHL 519
                      67899*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF118051.4E-15646387IPR021763Protein of unknown function DUF3326
PROSITE profilePS500907.375416468IPR017877Myb-like domain
SMARTSM007171.0E-4420470IPR001005SANT/Myb domain
SuperFamilySSF466891.49E-19425515IPR009057Homeodomain-like
CDDcd001673.64E-5425468No hitNo description
Gene3DG3DSA:1.10.10.601.0E-13426475IPR009057Homeodomain-like
PfamPF002492.2E-6428468IPR001005SANT/Myb domain
PROSITE profilePS5129425.369469523IPR017930Myb domain
SMARTSM007173.3E-15473521IPR001005SANT/Myb domain
PfamPF002492.5E-13474519IPR001005SANT/Myb domain
CDDcd001671.23E-10476519No hitNo description
Gene3DG3DSA:1.10.10.601.1E-21476523IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MAALHPSRPF RRPTLPSRPS SPSSATLRRF SCALAPSPTW PKRPYTTVLI VPTGVGAAVG  60
GFAGDALPVA RTVAAVADCL ISHPNVLNAA MLYWPIPNAL YVEGYALDRF AEGYWALQPV  120
HQNKVGLVLD AGIEEELRVR HLQVADATRA ALGLPVIEYI VTDTPLKVEK WIDPKCGKST  180
GRIGNSDSLL RAVDFLVNHS EVNAVAVVAR FPDDDDTEDL ENYRQGKGVD LLAGVEAIIS  240
HLIVKEFRIP CAHAPALLPL PMSPSLSPRS AAEEIGYTFL PCVLAGLSNA PQYVMRRQGS  300
SANGCVVAGD VDSVILPANA CGGDAAIAFA RSANKNKPLI ITVQENETVL DDTPEKLSIN  360
AVKVMNYWEA IGVIAAHKAG VDPKALRREG IANLRRKSQS CLANCKASTN ISVHDKQEKD  420
KGVSSKPEDE KLAECIRVHG EGCWRSLPRA AGLLWCGKSC RIRWINYLRP DEKRRNFNED  480
EEDLIIKLHA LLGNRWSLIA GRLPGRTDDE VKSYWNSHLK RKIITMGIGP SNHRLSTRPI  540
HSSPRHGPPL NTVVSNNDRA THRERECIEC DRISDAESCL EDIGACATPE INLDLTISMP  600
SSNSSAVEEK QQVEENNEWE GFIEGGKIAE VRLKQSAWSR MATTTGMPKD LRANGRESVL  660
GKALADPATN RGKALQGFPA DAAKIELMKL TRQAPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-224215257110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096824.10.0uncharacterized protein LOC109715977
TrEMBLA0A199UP730.0A0A199UP73_ANACO; Putative lipoprotein (Fragment)
STRINGORUFI01G01850.10.0(Oryza rufipogon)
STRINGLPERR01G01680.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1077288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-56myb domain protein 4