PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco019842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 140aa MW: 15129.4 Da PI: 10.5837 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.4e-28 | 75 | 124 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRrng+lKKA+ELS+LCdaev +i+fsstg+l+e++s Aco019842.1 75 KIDNLTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLHEFAS 124 69**********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.357 | 66 | 126 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-39 | 66 | 125 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-28 | 66 | 131 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.15E-39 | 67 | 130 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 68 | 122 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 68 | 88 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-25 | 75 | 122 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 88 | 103 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-28 | 103 | 124 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MSTHPFCPGA SRTMTHEAAG GKERSNAAGS HCLPMPATCH CPYGGGRSQG TGKTFEILIR 60 SEDKGMGRGK IVIRKIDNLT SRQVTFSKRR NGLLKKAKEL SILCDAEVGL IVFSSTGRLH 120 EFASSRYQHP LPRPSLPHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-18 | 66 | 135 | 1 | 70 | MEF2C |
5f28_B | 7e-18 | 66 | 135 | 1 | 70 | MEF2C |
5f28_C | 7e-18 | 66 | 135 | 1 | 70 | MEF2C |
5f28_D | 7e-18 | 66 | 135 | 1 | 70 | MEF2C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | cassava4.1_032220m | 5e-32 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.2 | 8e-32 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Aco019842.1 |